LiGraph - Convert a sugar graph to ASCII IUPAC sugar nomenclature or as a graph
Introduction

YOU HAVE: Often used form of notation:

J Biol Chem, 2002;277(14):11653-63

YOU GET: IUPAC notation in plain ASCII or as a graph:

                                          b-D-Galp-(1-4)+                
                                                        |                
b-D-Glcp-(1-6)+                L-a-D-Hepp-(1-7)+ L-a-D-Hepp-(1-5)-Kdo    
              |                                |        |                
        a-D-GlcpN-(1-4)-a-D-GalpA-(1-3)-L-a-D-Hepp-(1-3)+                
              |                                |                         
b-D-Galp-(1-4)+                  b-D-Glcp-(1-2)+  
 

 

Encode a Linucs code string for remote access for our tool:
Linucs Code:
   


Example:

<a href="http://www.dkfz-heidelberg.de/spec/ligraph/linucs_direct.php?linucscode=%5B%5D%5BD-GlcpNAc%5D%7B%5B%284%2B1%29%5D%5Bb-D-GlcpNAc%5D%7B%5B%284%2B1%29%5D%5Bb-D-Manp%5D%7B%5B%283%2B1%29%5D%5Ba-D-Manp%5D%7B%7D%5B%286%2B1%29%5D%5Ba-D-Manp%5D%7B%5B%283%2B1%29%5D%5Ba-D-Manp%5D%7B%7D%5B%286%2B1%29%5D%5Ba-D-Manp%5D%7B%7D%7D%7D%7D%7D" target="_blank"> [][D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{}}}}} </a>
Test: [][D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{}}}}}

back to top

© 1997-2009 German Cancer Research Center Heidelberg, Central Spectroscopic Division, Im Neuenheimer Feld 280, 69120 Heidelberg, Germany
© 2010-2016 Justus-Liebig University Giessen, Institute of Veterinary Physiology and Biochemistry, Frankfurter Str. 100, 35392 Giessen, Germany
All rights reserved.