Title: AMC009 SOSIPv5.2 in complex with Fabs ACS101 and ACS124
Keywords: HIV-1, antibodies, silent face, gp120-gp41 interface, VIRAL PROTEIN
Source: Human immunodeficiency virus 1, Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Release date: 2022-09-21
Entity 1: AMC009 SOSIPv5.2 envelope glycoprotein gp120
Strand: A,C,D
Type: polymer
Polymer type: polypeptide(L)
Source: Human immunodeficiency virus 1 (Taxonomy ID:
11676)
Expression system: Human,
Homo sapiens
Entity 2: AMC009 SOSIPv5.2 envelope glycoprotein gp41
Strand: B,E,F
Type: polymer
Polymer type: polypeptide(L)
Source: Human immunodeficiency virus 1 (Taxonomy ID:
11676)
Expression system: Human,
Homo sapiens
Entity 3: ACS114 heavy chain
Strand: H,O,Q
Type: polymer
Polymer type: polypeptide(L)
Source: Homo sapiens (Taxonomy ID:
9606)
Expression system: human,
Homo sapiens
Entity 4: ACS114 light chain
Strand: L,P,R
Type: polymer
Polymer type: polypeptide(L)
Source: Homo sapiens (Taxonomy ID:
9606)
Expression system: human,
Homo sapiens
Entity 5: ACS122 heavy chain
Strand: M,S
Type: polymer
Polymer type: polypeptide(L)
Source: Homo sapiens (Taxonomy ID:
9606)
Expression system: human,
Homo sapiens
Entity 6: ACS122 light chain
Strand: N,T
Type: polymer
Polymer type: polypeptide(L)
Source: Homo sapiens (Taxonomy ID:
9606)
Expression system: human,
Homo sapiens
Entity 10: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Type: branched
Entity 11: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Type: branched
Entity 12: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranos
Type: branched
Entity 13: 2-acetamido-2-deoxy-beta-D-glucopyranose
Type: non-polymer
Entity 7: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Type: branched
Entity 8: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Type: branched
Entity 9: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Type: branched
Structure entry #548: N-Glycan fragment GlcNAc2 [3 instances]
b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn
Structure entry #1517: N-Glycan core structure linked to Asn [7 instances]
a-D-Manp-(1-6)+
|
b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn
|
a-D-Manp-(1-3)+
Structure entry #288: Man-5 N-glycan M5A2BC linked to Asn [3 instances]
a-D-Manp-(1-6)+
|
a-D-Manp-(1-6)+
| |
a-D-Manp-(1-3)+ b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn
|
a-D-Manp-(1-3)+
Structure entry #231: M2 N-glycan linked to Asn [1 instances]
a-D-Manp-(1-6)-b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn
Structure entry #551: N-Glycan fragment GlcNAc2Man1 [1 instances]
b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn
Structure entry #1232: Man-6 N-Glycan linked to Asn [1 instances]
a-D-Manp-(1-6)+
|
a-D-Manp-(1-6)+
| |
a-D-Manp-(1-3)+ b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn
|
a-D-Manp-(1-2)-a-D-Manp-(1-3)+
Structure entry #229: N-Glycan fragment GlcNAc1 [21 instances]
b-D-GlcpNAc-(1-4)-Asn