wwPDB entry 7uot
Title: Native Lassa glycoprotein in complex with neutralizing antibodies 8.9F and 37.2D
Keywords: Lassa virus, Neutralizing antibody, N-linked glycans complex, VIRAL PROTEIN, VIRAL PROTEIN-IMMUNE SYSTEM complex
Source: Lassa virus, Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Release date: 2022-11-02
Entity 1: Glycoprotein G1
Strand: A,B,C
Type: polymer
Polymer type: polypeptide(L)
Source: Lassa virus (Taxonomy ID:
11622)
Expression system: Homo sapiens
Source gene: GPC, GP-C
Entity 2: Glycoprotein G2
Strand: a,b,c
Type: polymer
Polymer type: polypeptide(L)
Synonyms: GP2
Source: Lassa virus (Taxonomy ID:
11622)
Expression system: Homo sapiens
Source gene: GPC, GP-C
Entity 3: 37.2D light chain (variable domain)
Strand: T,P,R
Type: polymer
Polymer type: polypeptide(L)
Source: Homo sapiens (Taxonomy ID:
9606)
Expression system: DROSOPHILA MELANOGASTER
Entity 4: 37.2D heavy chain (variable domain)
Strand: S,O,Q
Type: polymer
Polymer type: polypeptide(L)
Source: Homo sapiens (Taxonomy ID:
9606)
Expression system: DROSOPHILA MELANOGASTER
Entity 5: 8.9F heavy chain (variable domain)
Strand: H
Type: polymer
Polymer type: polypeptide(L)
Source: Homo sapiens (Taxonomy ID:
9606)
Expression system: DROSOPHILA MELANOGASTER
Entity 6: 8.9F light chain (variable domain)
Strand: L
Type: polymer
Polymer type: polypeptide(L)
Source: Homo sapiens (Taxonomy ID:
9606)
Expression system: DROSOPHILA MELANOGASTER
Entity 10: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
Type: branched
Entity 11: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Type: branched
Entity 12: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
Type: branched
Entity 13: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Type: branched
Entity 14: alpha-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose
Type: branched
Entity 7: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Type: branched
Entity 8: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Type: branched
Entity 9: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
Type: branched
Structure entry #551: N-Glycan fragment GlcNAc2Man1 [6 instances]
b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn
Structure entry #548: N-Glycan fragment GlcNAc2 [11 instances]
b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn
Structure entry #7440: M1F N-glycan linked to Asn [3 instances]
a-L-Fucp-(1-6)+
|
b-D-GlcpNAc-(1-4)-Asn
|
b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)+
Structure entry #2026 [5 instances]
a-L-Fucp-(1-6)+
|
a-D-Manp-(1-6)+ b-D-GlcpNAc-(1-4)-Asn
| |
b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)+
|
a-D-Manp-(1-3)+
Structure entry #16145 [3 instances]
a-D-Manp-(1-6)+
|
b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn
|
a-D-Manp-(1-2)-a-D-Manp-(1-3)+
Structure entry #550 [3 instances]
a-L-Fucp-(1-6)+
|
b-D-GlcpNAc-(1-4)-Asn
|
b-D-GlcpNAc-(1-4)+
Structure entry #231: M2 N-glycan linked to Asn [1 instances]
a-D-Manp-(1-6)-b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn
Structure entry #18691 [1 instances]
b-D-GlcpNAc-(1-4)+
|
b-D-GlcpNAc-(1-4)-Asn
|
a-L-Fucp-(1-3)+
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