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Glycosciences.DB structure entry #80:

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Format: CarbBank LINUCS GlycoCT_condensed GlycoCT_xml


 a-L-Fucp-(1-2)-b-D-Galp-(1-3)-D-GalNAc-ol


RES
1b:o-dgal-HEX-0:0|1:aldi
2s:n-acetyl
3b:b-dgal-HEX-1:5
4b:a-lgal-HEX-1:5|6:d
LIN
1:1d(2+1)2n
2:1o(3+1)3d
3:3o(2+1)4d


<?xml version="1.0" encoding="UTF-8"?>
 <sugar version="1.0">
 <residues>
 <basetype id="1" anomer="o" superclass="hex" ringStart="0" ringEnd="0" name="o-dgal-HEX-0:0|1:aldi">
 <stemtype id="1" type="dgal" />
 <modification type="aldi" pos_one="1" />
 </basetype>
 <substituent id="2" name="n-acetyl" />
 <basetype id="3" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
 <stemtype id="1" type="dgal" />
 </basetype>
 <basetype id="4" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-lgal-HEX-1:5|6:d">
 <stemtype id="1" type="lgal" />
 <modification type="d" pos_one="6" />
 </basetype>
 </residues>
 <linkages>
 <connection id="1" parent="1" child="2">
 <linkage id="1" parentType="d" childType="n">
 <parent pos="2" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="2" parent="1" child="3">
 <linkage id="2" parentType="o" childType="d">
 <parent pos="3" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="3" parent="3" child="4">
 <linkage id="3" parentType="o" childType="d">
 <parent pos="2" />
 <child pos="1" />
 </linkage>
 </connection>
 </linkages>
 </sugar>

SNFG-style Graphics

3D Structure Model

download coordinates

Blood Group H Antigen (Show) (Search Database)

General Structure Data

Chemical Formula:
Molec. Weight:
# Atoms:
# Residues:	3
# Heavy Atoms:

Superclasses:

Hex
Hex	2
dHex	1

Residues:

Residue	Count
A-L-FUCP	1
B-D-GALP	1
D-GALNAC-OL	1

NMR Proton Chemical Shift Info

MHz	500
Temperature	300
Solvent	D2O
Note	a)From Eur J. Biochem. (1981) 118: 487-495. At 360 MHz. b)Between 3.7 and 3.8 ppm.
Residue	Linkage	Proton	PPM	JFrom	JTo	Hz	Note
D-GalNAc-ol		H1	3.730			0	a
D-GalNAc-ol		H1'	3.750			0	a,b
D-GalNAc-ol		H2	4.399			0
D-GalNAc-ol		H3	4.091			0
D-GalNAc-ol		H4	3.522			0
D-GalNAc-ol		H5	4.163			0
D-GalNAc-ol		H6	3.680			0
D-GalNAc-ol		H6'	3.630			0	a
D-GalNAc-ol		NAC	2.046			0
b-D-Galp	3	H1	4.584			0
b-D-Galp	3	H2	3.688			0	a
b-D-Galp	3	H3	3.880			0	a
b-D-Galp	3	H4	3.926			0
a-L-Fucp	2,3	H1	5.256			0
a-L-Fucp	2,3	H5	4.279			0
a-L-Fucp	2,3	CH3	1.243			0

NMR Carbon Chemical Shift Info

MHz	0
Temperature	0
Solvent	D2O
Residue	Linkage	Carbon	PPM	JFrom	JTo	Hz	Note
D-GalNAc-ol		C1	61.10			0
D-GalNAc-ol		C2	52.20			0
D-GalNAc-ol		C3	75.30			0
D-GalNAc-ol		C4	70.10			0
D-GalNAc-ol		C5	69.60			0
D-GalNAc-ol		C6	63.40			0
b-D-Galp	3	C1	102.90			0
b-D-Galp	3	C2	79.90			0
b-D-Galp	3	C3	72.50			0
b-D-Galp	3	C4	69.30			0
b-D-Galp	3	C5	75.60			0
b-D-Galp	3	C6	61.60			0
a-L-Fucp	2,3	C1	101.90			0
a-L-Fucp	2,3	C2	70.10			0
a-L-Fucp	2,3	C3	70.30			0
a-L-Fucp	2,3	C4	72.90			0
a-L-Fucp	2,3	C5	69.10			0
a-L-Fucp	2,3	C6	16.20			0

Literature references: 35

1 - 5 of 35 literature references

Reference #21683

Zhang X; Wang C; Han Q; Chen X; Li G; Yu G

Highly sialylated mucin-type glycopeptide from porcine intestinal mucosa after heparin extraction: O-glycan profiling and immunological activity evaluation.

Published 2021 in Glycoconj J, 38: 527-537

Reference contains 35 structures

Reference #6802

Shimoda Y; Kitajima K; Inoue S; Inoue Y

Isolation, structural determination, and calcium-binding properties of the major glycoprotein present in Bufo japonicus japonicus egg jelly

Published 1994 in Eur J Biochem, 223: 223-231

Reference contains 4 structures

Reference #3202

Hanisch FG; Heimbuchel G; Baldus SE; Uhlenbruck G; Schmits R; Pfreundschuh M; Shwonzen M; Vierbuchen M; Bara J; Peter-Katalinic J

Monoclonal antibody FW6 defines an epitope on .alpha.3/4-monofucosylated polylactosaminoglycans expressed by fetal and colon carcinoma-associated mucins

Published 1993 in Cancer Res, 53: 4367-4375

Reference contains 16 structures

Reference #4693

Krotkiewski H; Lisowska E; Nilsson G; Gronberg G; Nilsson B

An improved approach to the analysis of the structure of small oligosaccharides of glycoproteins: application to the O-linked oligosaccharides from human glycophorin A

Published 1993 in Carbohydr Res, 239: 35-50

Reference contains 5 structures

Reference #10053

Carlstedt I; Herrmann A; Karlsson H; Sheehan J; Fransson LA; Hansson GC

Characterization of two different glycosylated domains from the insoluble mucin complex of rat small intestine

Published 1993 in J Biol Chem, 268: 18771-18781

Reference contains 14 structures

NCBI Taxonomy ID	Scientific Name
9606	Homo sapiens
10114	Rattus
9823	Sus scrofa

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