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Glycosciences.DB structure entry #7997:
b-D-Galp-(1-4)-b-D-GlcpNAc-(1-3)-b-D-Galp-(1-4)-b-D-Glcp
[][B-D-GLCP]{[(4+1)][B-D-GALP]{[(3+1)][B-D-GLCPNAC]{[(4+1)][B-D-GALP]{}}}}
RES
1b:b-dglc-HEX-1:5
2b:b-dgal-HEX-1:5
3b:b-dglc-HEX-1:5
4s:n-acetyl
5b:b-dgal-HEX-1:5
LIN
1:1o(4+1)2d
2:2o(3+1)3d
3:3d(2+1)4n
4:3o(4+1)5d
<?xml version="1.0" encoding="UTF-8"?>
<sugar version="1.0">
<residues>
<basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<basetype id="2" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
<stemtype id="1" type="dgal" />
</basetype>
<basetype id="3" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="4" name="n-acetyl" />
<basetype id="5" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
<stemtype id="1" type="dgal" />
</basetype>
</residues>
<linkages>
<connection id="1" parent="1" child="2">
<linkage id="1" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
<connection id="2" parent="2" child="3">
<linkage id="2" parentType="o" childType="d">
<parent pos="3" />
<child pos="1" />
</linkage>
</connection>
<connection id="3" parent="3" child="4">
<linkage id="3" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="4" parent="3" child="5">
<linkage id="4" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
</linkages>
</sugar>

1 - 4 of 4 entries with matching glycan part

b-D-Galp-(1-4)-b-D-GlcpNAc-(1-3)-b-D-Galp-(1-4)-b-D-Glcp-(1-1)-Ceramide
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Taxons: 11 |

b-D-Galp-(1-4)-b-D-GlcpNAc-(1-3)-b-D-Galp-(1-4)-b-D-Glcp-(1-1)-Methyl
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Taxons |

b-D-Galp-(1-4)-b-D-GlcpNAc-(1-3)-b-D-Galp-(1-4)-b-D-Glcp-(1-O)-<Trimethylsilyl>
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Taxons |

b-D-Galp-(1-4)-b-D-GlcpNAc-(1-3)-b-D-Galp-(1-4)-b-D-Glcp-(1-9)-9-hydroxy-Nonanoate-(1-1)-Methyl
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Taxons |
- GSL core, neolacto-type (Show) (Search Database)
Chemical Formula: | C26H45N1O21 | #C | #H | #O | #N | |
Molec. Weight: | 707 | 26 | 45 | 21 | 1 | |
# Atoms: | 93 | |||||
# Residues: | 4 | |||||
# Heavy Atoms: | 48 |
Superclasses:
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Residues:
|
1 - 5 of 6 PDB entries

PDB ID 5t7i:
Crystal structure of galectin-8N in complex with LNnT
Description: Galectin-8
Source: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2Å
Release date: 2017-01-04
Entry features 1 distinct glycan structures [1 instances].

PDB ID 4yg0:
Structural basis of glycan recognition in neonate-specific rotaviruses
Description: Outer capsid protein VP4
Source: Human rotavirus A
Experimental method: X-RAY DIFFRACTION
Resolution: 1.285Å
Release date: 2015-09-30
Entry features 1 distinct glycan structures [1 instances].

PDB ID 4yg6:
Structural basis of glycan recognition in neonate-specific rotaviruses
Description: P[11] human rotavirus N155 VP8*
Source: Rotavirus A
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46Å
Release date: 2015-09-30
Entry features 3 distinct glycan structures [3 instances].

PDB ID 4ylz:
Crystal structure of the human galectin-4 C-terminal carbohydrate recognition domain in complex with lacto-N-neotetraose (LNnT)
Description: Human galectin-4 C-terminal carbohydrate recognition domain
Source: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1Å
Release date: 2015-07-01
Entry features 1 distinct glycan structures [4 instances].

PDB ID 4lbk:
Crystal structure of Human galectin-3 CRD K176L mutant in complex with LNnT
Description: Galectin-3
Source: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6Å
Release date: 2014-01-22
Entry features 1 distinct glycan structures [1 instances].
1 - 5 of 8 literature references

Reference #22000
Sojitra M; Sarkar S; Maghera J; Rodrigues E; Carpenter EJ; Seth S; Ferrer Vinals D; Bennett NJ; Reddy R; Khalil A; Xue X; Bell MR; Zheng RB; Zhang P; Nycholat C; Bailey JJ; Ling CC; Lowary TL; Paulson JC; Macauley MS; Derda R
Genetically encoded multivalent liquid glycan array displayed on M13 bacteriophage.
Published 2021 in Nat Chem Biol, 17: 806-816
Reference contains 65 structures

Reference #21727
Saha S; Coady A; Sasmal A; Kawanishi K; Choudhury B; Yu H; Sorensen RU; Inostroza J; Schoenhofen IC; Chen X; Münster-Kühnel A; Sato C; Kitajima K; Ram S; Nizet V; Varki A
Exploring the Impact of Ketodeoxynonulosonic Acid in Host-Pathogen Interactions Using Uptake and Surface Display by Nontypeable Haemophilus influenzae.
Published 2021 in mBio, 12:
Reference contains 10 structures

Reference #21327
Kitova EN; Han L; Vinals DF; Kitov PI; Derda R; Klassen JS
Influence of labeling on the glycan affinities and specificities of glycan-binding proteins. A case study involving a C-terminal fragment of human galectin-3.
Published 2020 in Glycobiology, 30: 49-57
Reference contains 5 structures

Reference #21814
Roderer D; Bröcker F; Sitsel O; Kaplonek P; Leidreiter F; Seeberger PH; Raunser S
Glycan-dependent cell adhesion mechanism of Tc toxins.
Published 2020 in Nat Commun, 11: 2694
Reference contains 13 structures

Reference #20916
Taylor ME; Snelling T; Smith DF; Drickamer K
Absence of a human ortholog of rodent Kupffer cell galactose-binding receptor encoded by the CLEC4f gene.
Published 2019 in Glycobiology, 29: 332-345
Reference contains 25 structures
1 - 5 of 5 literature references from PDB entries

Reference #20139
Bohari MH; Yu X; Zick Y; Blanchard H
Structure-based rationale for differential recognition of lacto- and neolacto- series glycosphingolipids by the N-terminal domain of human galectin-8.
Published 2016 in Sci Rep, 6: 39556

Reference #19342
Hu L; Ramani S; Czako R; Sankaran B; Yu Y; Smith DF; Cummings RD; Estes MK; Venkataram Prasad BV
Structural basis of glycan specificity in neonate-specific bovine-human reassortant rotavirus.
Published 2015 in Nat Commun, 6: 8346

Reference #19228
Bum-Erdene K; Leffler H; Nilsson UJ; Blanchard H
Structural characterization of human galectin-4 C-terminal domain: elucidating the molecular basis for recognition of glycosphingolipids, sulfated saccharides and blood group antigens.
Published 2015 in FEBS J., 282: 3348-67

Reference #18747
Collins PM; Bum-Erdene K; Yu X; Blanchard H
Galectin-3 interactions with glycosphingolipids.
Published 2014 in J. Mol. Biol., 426: 1439-51

Reference #17427
Guardado-Calvo P; Llamas-Saiz AL; Fox GC; Glasgow JN; van Raaij MJ
Crystallization of the head and galectin-like domains of porcine adenovirus isolate NADC-1 fibre.
Published 2009 in Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 65: 1149-52
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