- ☰
- Add title
- Add keywords
- Add publication
- Leave comment
Glycosciences.DB structure entry #7120:
a-L-Fucp-(1-6)-b-D-GlcpNAc
[][B-D-GLCPNAC]{[(6+1)][A-L-FUCP]{}}
RES
1b:b-dglc-HEX-1:5
2s:n-acetyl
3b:a-lgal-HEX-1:5|6:d
LIN
1:1d(2+1)2n
2:1o(6+1)3d
<?xml version="1.0" encoding="UTF-8"?>
<sugar version="1.0">
<residues>
<basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="2" name="n-acetyl" />
<basetype id="3" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-lgal-HEX-1:5|6:d">
<stemtype id="1" type="lgal" />
<modification type="d" pos_one="6" />
</basetype>
</residues>
<linkages>
<connection id="1" parent="1" child="2">
<linkage id="1" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="2" parent="1" child="3">
<linkage id="2" parentType="o" childType="d">
<parent pos="6" />
<child pos="1" />
</linkage>
</connection>
</linkages>
</sugar>
3D Structure Model1 - 4 of 4 entries with matching glycan part
Structure entry #230:
a-L-Fucp-(1-6)-b-D-GlcpNAc-(1-4)-Asn
 |
 1H: 1 |
 : 251 |
 : 14 |
 |
Taxons: 4 |
Structure entry #2216:
a-L-Fucp-(1-6)-b-D-GlcpNAc-(1-1)-Methyl
 |
 |
 |
: 2 |
|
Taxons |
Structure entry #7121:
a-L-Fucp-(1-6)-b-D-GlcpNAc-(1-1)-<4-nitrophenol>
|
|
|
: 1 |
|
Taxons |
Structure entry #22079:
a-L-Fucp-(1-6)-b-D-GlcpNAc-(1-1)-allyl
|
|
|
: 1 |
|
Taxons |
| Chemical Formula: | C14H25N1O10 | #C | #H | #O | #N | |
| Molec. Weight: | 367 | 14 | 25 | 10 | 1 | |
| # Atoms: | 50 | |||||
| # Residues: | 2 | |||||
| # Heavy Atoms: | 25 | |||||
Superclasses:
|
Residues:
|
||||||||||||
PDB references: 31 - 3 of 3 PDB entries
PDB ID 6ohe:
Alpha-L-fucosidase AlfC D200A in complex with Fuca(1,6)GlcNAc
Description: AlfC
Source: Lactobacillus casei
Experimental method: X-RAY DIFFRACTION
Resolution: 3.14Å
Release date: 2020-04-08
Entry features 1 distinct glycan structures [4 instances].
PDB ID 6kpn:
Crystal Structure of endo-beta-N-acetylglucosaminidase from Cordyceps militaris D154N/E156Q mutant in complex with fucosyl-N-acetylglucosamine
Description: Chitinase
Source: Cordyceps militaris CM01
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1Å
Release date: 2019-10-02
Entry features 1 distinct glycan structures [1 instances].
PDB ID 4agt:
Crystal Structure of Fucose binding lectin from Aspergillus Fumigatus (AFL) in complex with Fuc1-6GlcNAc.
Description: FUCOSE-SPECIFIC LECTIN FLEA
Source: ASPERGILLUS FUMIGATUS
Experimental method: X-RAY DIFFRACTION
Resolution: 2Å
Release date: 2013-02-13
Entry features 3 distinct glycan structures [12 instances].
Conformational maps: 1
Map ID: 7593
Disaccharide Fragment: a-L-Fucp-(1-6)-b-D-GlcpNAc
Linkage Path: 6
Method: MD MM3(1996) Tinker 4 HTMD, 1000K, 10ns
Literature references: 31 - 3 of 3 literature references
Reference #21600
Shivatare SS; Cheng TR; Cheng YY; Shivatare VS; Tsai TI; Chuang HY; Wu CY; Wong CH
Immunogenicity Evaluation of N-Glycans Recognized by HIV Broadly Neutralizing Antibodies.
Published 2021 in ACS Chem Biol, 16: 2016-2025
Reference contains 14 structures
Reference #21300
Seki H; Huang Y; Arakawa T; Yamada C; Kinoshita T; Iwamoto S; Higuchi Y; Takegawa K; Fushinobu S
Structural basis for the specific cleavage of core-fucosylated -glycans by endo-β--acetylglucosaminidase from the fungus Cordyceps militaris.
Published 2019 in J. Biol. Chem., 294: 17143-17154
Reference contains 3 structures
Reference #3585
Rana SS; Barlow JJ; Matta KL
Synthetic studies in carbohydrates. Part XXII. Synthesis of phenyl 2-acetamido-2-deoxy-4-O-.alpha.-L-fucopyranosyl-.beta.-D-glucopyranoside and p-nitrophenyl 2-acetamido-2-deoxy-6-O-.alpha.-L-fucopyranosyl-.beta.-D-glucopyranoside
Published 1982 in Carbohydr Res, 101: 245-253
Reference contains 5 structures
1 - 3 of 3 literature references from PDB entries
Reference #22151
Klontz EH; Li C; Kihn K; Fields JK; Beckett D; Snyder GA; Wintrode PL; Deredge D; Wang LX; Sundberg EJ
Structure and dynamics of an α-fucosidase reveal a mechanism for highly efficient IgG transfucosylation.
Published 2020 in Nat Commun, 11: 6204
Reference #21257
Huang Y; Higuchi Y; Kinoshita T; Mitani A; Eshima Y; Takegawa K
Characterization of novel endo-β-N-acetylglucosaminidases from Sphingobacterium species, Beauveria bassiana and Cordyceps militaris that specifically hydrolyze fucose-containing oligosaccharides and human IgG.
Published 2018 in Sci Rep, 8: 246
Reference #19144
Houser J; Komarek J; Cioci G; Varrot A; Imberty A; Wimmerova M
Structural insights into Aspergillus fumigatus lectin specificity: AFL binding sites are functionally non-equivalent.
Published 2015 in Acta Crystallogr. D Biol. Crystallogr., 71: 442-53
Consortium for Functional Glycomics (CFG):
×
Add title to glycan structure entry:
×
Add keyword to glycan structure entry:
×
Add publication to glycan structure entry:
×