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Glycosciences.DB structure entry #7119:

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Format: CarbBank LINUCS GlycoCT_condensed GlycoCT_xml


 a-L-Fucp-(1-6)-a-D-GlcpNAc


RES
1b:a-dglc-HEX-1:5
2s:n-acetyl
3b:a-lgal-HEX-1:5|6:d
LIN
1:1d(2+1)2n
2:1o(6+1)3d


<?xml version="1.0" encoding="UTF-8"?>
 <sugar version="1.0">
 <residues>
 <basetype id="1" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dglc-HEX-1:5">
 <stemtype id="1" type="dglc" />
 </basetype>
 <substituent id="2" name="n-acetyl" />
 <basetype id="3" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-lgal-HEX-1:5|6:d">
 <stemtype id="1" type="lgal" />
 <modification type="d" pos_one="6" />
 </basetype>
 </residues>
 <linkages>
 <connection id="1" parent="1" child="2">
 <linkage id="1" parentType="d" childType="n">
 <parent pos="2" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="2" parent="1" child="3">
 <linkage id="2" parentType="o" childType="d">
 <parent pos="6" />
 <child pos="1" />
 </linkage>
 </connection>
 </linkages>
 </sugar>

SNFG-style Graphics

3D Structure Model

download coordinates

Corresponding entries: 2

1 - 2 of 2 entries with matching glycan part

Structure entry #2846:

a-L-Fucp-(1-6)-a-D-GlcpNAc-(1-1)-Methyl

no 3d model

no NMR spectra

literature references

no GlycoMaps

Taxons

Structure entry #22676:

a-L-Fucp-(1-6)-a-D-GlcpNAc-(1-4)-ASN

no NMR spectra

no literature references

no Ref

no GlycoMaps

Taxons

General Structure Data

Chemical Formula:	C₁₄H₂₅N₁O₁₀		#C	#H	#O	#N
Molec. Weight:	367		14	25	10	1
# Atoms:	50
# Residues:	2
# Heavy Atoms:	25

Superclasses:

Hex
dHex	1
HexNAc	1

Residues:

Residue	Count
A-D-GLCPNAC	1
A-L-FUCP	1

PDB references: 2

1 - 2 of 2 PDB entries

PDB ID 6gke: Aleuria aurantia lectin AAL N224Q mutant in complex with Fucalpha1-6GlcNAc

Description: Fucose-specific lectin

Source: Aleuria aurantia

Experimental method: X-RAY DIFFRACTION

Resolution: 1.08Å

Release date: 2019-06-19

Entry features 2 distinct glycan structures [5 instances].

PDB ID 4agt: Crystal Structure of Fucose binding lectin from Aspergillus Fumigatus (AFL) in complex with Fuc1-6GlcNAc.

Description: FUCOSE-SPECIFIC LECTIN FLEA

Source: ASPERGILLUS FUMIGATUS

Experimental method: X-RAY DIFFRACTION

Resolution: 2Å

Release date: 2013-02-13

Entry features 3 distinct glycan structures [12 instances].

Conformational maps: 1

Map ID: 7942

Disaccharide Fragment: a-L-Fucp-(1-6)-a-D-GlcpNAc

Linkage Path: 6

Method: MD MM3(1996) Tinker 4 HTMD, 1000K, 10ns

Literature references: 1

1 - 1 of 1 literature references

Reference #3585

Rana SS; Barlow JJ; Matta KL

Synthetic studies in carbohydrates. Part XXII. Synthesis of phenyl 2-acetamido-2-deoxy-4-O-.alpha.-L-fucopyranosyl-.beta.-D-glucopyranoside and p-nitrophenyl 2-acetamido-2-deoxy-6-O-.alpha.-L-fucopyranosyl-.beta.-D-glucopyranoside

Published 1982 in Carbohydr Res, 101: 245-253

Reference contains 5 structures

Further literature references from PDB entries: 1

1 - 1 of 1 literature references from PDB entries

Reference #19144

Houser J; Komarek J; Cioci G; Varrot A; Imberty A; Wimmerova M

Structural insights into Aspergillus fumigatus lectin specificity: AFL binding sites are functionally non-equivalent.

Published 2015 in Acta Crystallogr. D Biol. Crystallogr., 71: 442-53

Consortium for Functional Glycomics (CFG):

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