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Glycosciences.DB structure entry #6649:

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Format: CarbBank LINUCS GlycoCT_condensed GlycoCT_xml


 a-L-Fucp-(1-2)-b-D-Galp-(1-4)+
                              |
                         b-D-GlcpNAc-(1-3)-b-D-Galp
                              |
                a-L-Fucp-(1-3)+


RES
1b:b-dgal-HEX-1:5
2b:b-dglc-HEX-1:5
3s:n-acetyl
4b:a-lgal-HEX-1:5|6:d
5b:b-dgal-HEX-1:5
6b:a-lgal-HEX-1:5|6:d
LIN
1:1o(3+1)2d
2:2d(2+1)3n
3:2o(3+1)4d
4:2o(4+1)5d
5:5o(2+1)6d


<?xml version="1.0" encoding="UTF-8"?>
 <sugar version="1.0">
 <residues>
 <basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
 <stemtype id="1" type="dgal" />
 </basetype>
 <basetype id="2" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
 <stemtype id="1" type="dglc" />
 </basetype>
 <substituent id="3" name="n-acetyl" />
 <basetype id="4" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-lgal-HEX-1:5|6:d">
 <stemtype id="1" type="lgal" />
 <modification type="d" pos_one="6" />
 </basetype>
 <basetype id="5" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
 <stemtype id="1" type="dgal" />
 </basetype>
 <basetype id="6" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-lgal-HEX-1:5|6:d">
 <stemtype id="1" type="lgal" />
 <modification type="d" pos_one="6" />
 </basetype>
 </residues>
 <linkages>
 <connection id="1" parent="1" child="2">
 <linkage id="1" parentType="o" childType="d">
 <parent pos="3" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="2" parent="2" child="3">
 <linkage id="2" parentType="d" childType="n">
 <parent pos="2" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="3" parent="2" child="4">
 <linkage id="3" parentType="o" childType="d">
 <parent pos="3" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="4" parent="2" child="5">
 <linkage id="4" parentType="o" childType="d">
 <parent pos="4" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="5" parent="5" child="6">
 <linkage id="5" parentType="o" childType="d">
 <parent pos="2" />
 <child pos="1" />
 </linkage>
 </connection>
 </linkages>
 </sugar>

SNFG-style Graphics

3D Structure Model

download coordinates

Corresponding entries: 1

1 - 1 of 1 entries with matching glycan part

Structure entry #15456:

a-L-Fucp-(1-2)-b-D-Galp-(1-4)+ | b-D-GlcpNAc-(1-3)-b-D-Galp-(1-1)-allyl | a-L-Fucp-(1-3)+

no NMR spectra

literature references

no GlycoMaps

Taxons

Lewis Y (Show) (Search Database)

General Structure Data

Chemical Formula:	C₃₂H₅₅N₁O₂₄		#C	#H	#O	#N
Molec. Weight:	837		32	55	24	1
# Atoms:	112
# Residues:	5
# Heavy Atoms:	57

Superclasses:

Hex
Hex	2
dHex	2
HexNAc	1

Residues:

Residue	Count
A-L-FUCP	2
B-D-GALP	2
B-D-GLCPNAC	1

Literature references: 4

1 - 4 of 4 literature references

Reference #20857

Sletmoen M; Gerken TA; Stokke BT; Burchell J; Brewer CF

Tn and STn are members of a family of carbohydrate tumor antigens that possess carbohydrate-carbohydrate interactions.

Published 2018 in Glycobiology, 28: 437-442

Reference contains 13 structures

Reference #7889

Ito K; Handa K; Hakomori SI

Species-specific expression of sialosyl-Lex on polymorphonuclear leukocytes (PMN), in relation to selectin-dependent PMN responses

Published 1994 in Glycoconj J, 11: 232-237

Reference contains 5 structures

Reference #3165

Nakasaki H; Mitomi T; Noto T; Ogoshi K; Hanaue H; Tanaka Y; Makuuchi H; Clausen H; Hakomori S

Mosaicism in the expression of tumor-associated carbohydrate antigens in human colonic and gastric cancers

Published 1989 in Cancer Res, 49: 3662-3669

Reference contains 4 structures

Reference #6987

Shin S; Tachikawa T; Nakajima K

Antiidiotype antibodies to antibodies to cancer-specfic carbohydrates, process for preparing them, and method of determining antibody for cancer diagnosis

Published 1988 in Eur Pat Appl, 0: 1-51

Reference contains 5 structures

NCBI Taxonomy ID	Scientific Name
9606	Homo sapiens

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