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Glycosciences.DB structure entry #664:

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Format: CarbBank LINUCS GlycoCT_condensed GlycoCT_xml


 a-D-Neup5Gc-(2-3)-b-D-Galp


RES
1b:b-dgal-HEX-1:5
2b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d
3s:n-glycolyl
LIN
1:1o(3+2)2d
2:2d(5+1)3n


<?xml version="1.0" encoding="UTF-8"?>
 <sugar version="1.0">
 <residues>
 <basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
 <stemtype id="1" type="dgal" />
 </basetype>
 <basetype id="2" anomer="a" superclass="non" ringStart="2" ringEnd="6" name="a-dgro-dgal-NON-2:6|1:a|2:keto|3:d">
 <stemtype id="1" type="dgro" />
 <stemtype id="2" type="dgal" />
 <modification type="a" pos_one="1" />
 <modification type="keto" pos_one="2" />
 <modification type="d" pos_one="3" />
 </basetype>
 <substituent id="3" name="n-glycolyl" />
 </residues>
 <linkages>
 <connection id="1" parent="1" child="2">
 <linkage id="1" parentType="o" childType="d">
 <parent pos="3" />
 <child pos="2" />
 </linkage>
 </connection>
 <connection id="2" parent="2" child="3">
 <linkage id="2" parentType="d" childType="n">
 <parent pos="5" />
 <child pos="1" />
 </linkage>
 </connection>
 </linkages>
 </sugar>

SNFG-style Graphics

3D Structure Model

download coordinates

Corresponding entries: 1

1 - 1 of 1 entries with matching glycan part

Structure entry #27966:

a-D-Neup5Gc-(2-3)-b-D-Galp-(1-1)-methyl

no 3d model

no NMR spectra

no literature references

no Ref

no GlycoMaps

Taxons

General Structure Data

Chemical Formula:	C₁₇H₂₈O₁₆		#C	#H	#O
Molec. Weight:	488		17	28	16
# Atoms:	61
# Residues:	2
# Heavy Atoms:	33

Superclasses:

Neu		Hex
NeuGc	1	Hex	1

Residues:

Residue	Count
A-D-NEUP5GC	1
B-D-GALP	1

PDB references: 2

1 - 2 of 2 PDB entries

PDB ID 6e7h: Crystal structure of H5 hemagglutinin mutant Y161A from A/Viet Nam/1203/2004 H5N1 influenza virus in complex with 3'-GcLN

Description: Hemagglutinin HA1 chain, Hemagglutinin HA2 chain

Source: Influenza A virus (A/Viet Nam/1203/2004(H5N1))

Experimental method: X-RAY DIFFRACTION

Resolution: 3.3Å

Release date: 2019-06-19

Entry features 4 distinct glycan structures [6 instances].

Description:

Source:

Experimental method: X-ray Diffraction

Resolution: 2.05Å

Release date:

Entry features 5 distinct glycan structures [9 instances].

Literature references: 4

1 - 4 of 4 literature references

Reference #20556

Bensing BA; Khedri Z; Deng L; Yu H; Prakobphol A; Fisher SJ; Chen X; Iverson TM; Varki A; Sullam PM

Novel aspects of sialoglycan recognition by the Siglec-like domains of streptococcal SRR glycoproteins.

Published 2016 in Glycobiology, 26: 1222-1234

Reference contains 11 structures

Reference #21089

Freire-de-Lima L; Fonseca LM; Oeltmann T; Mendonça-Previato L; Previato JO

The trans-sialidase, the major Trypanosoma cruzi virulence factor: Three decades of studies.

Published 2015 in Glycobiology, 25: 1142-9

Reference contains 2 structures

Reference #20980

Padler-Karavani V; Hurtado-Ziola N; Pu M; Yu H; Huang S; Muthana S; Chokhawala HA; Cao H; Secrest P; Friedmann-Morvinski D; Singer O; Ghaderi D; Verma IM; Liu YT; Messer K; Chen X; Varki A; Schwab R

Human xeno-autoantibodies against a non-human sialic acid serve as novel serum biomarkers and immunotherapeutics in cancer.

Published 2011 in Cancer Res., 71: 3352-63

Reference contains 55 structures

Physicochemical analyses of oligosaccharide determinants of glycoproteins

Published 1994 in Adv Carbohydr Chem Biochem, 50: 311-350

Reference contains 70 structures

Consortium for Functional Glycomics (CFG):

carbOlink_20518_D000

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