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Glycosciences.DB structure entry #6639:
a-D-Neup5Ac-(2-3)-b-D-Galp-(1-4)+
|
b-D-GlcpNAc-(1-3)-b-D-Galp
|
a-L-Fucp-(1-3)+
[][B-D-GALP]{[(3+1)][B-D-GLCPNAC]{[(3+1)][A-L-FUCP]{}[(4+1)][B-D-GALP]{[(3+2)][A-D-NEUP5AC]{}}}}
RES
1b:b-dgal-HEX-1:5
2b:b-dglc-HEX-1:5
3s:n-acetyl
4b:a-lgal-HEX-1:5|6:d
5b:b-dgal-HEX-1:5
6b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d
7s:n-acetyl
LIN
1:1o(3+1)2d
2:2d(2+1)3n
3:2o(3+1)4d
4:2o(4+1)5d
5:5o(3+2)6d
6:6d(5+1)7n
<?xml version="1.0" encoding="UTF-8"?>
<sugar version="1.0">
<residues>
<basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
<stemtype id="1" type="dgal" />
</basetype>
<basetype id="2" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="3" name="n-acetyl" />
<basetype id="4" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-lgal-HEX-1:5|6:d">
<stemtype id="1" type="lgal" />
<modification type="d" pos_one="6" />
</basetype>
<basetype id="5" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
<stemtype id="1" type="dgal" />
</basetype>
<basetype id="6" anomer="a" superclass="non" ringStart="2" ringEnd="6" name="a-dgro-dgal-NON-2:6|1:a|2:keto|3:d">
<stemtype id="1" type="dgro" />
<stemtype id="2" type="dgal" />
<modification type="a" pos_one="1" />
<modification type="keto" pos_one="2" />
<modification type="d" pos_one="3" />
</basetype>
<substituent id="7" name="n-acetyl" />
</residues>
<linkages>
<connection id="1" parent="1" child="2">
<linkage id="1" parentType="o" childType="d">
<parent pos="3" />
<child pos="1" />
</linkage>
</connection>
<connection id="2" parent="2" child="3">
<linkage id="2" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="3" parent="2" child="4">
<linkage id="3" parentType="o" childType="d">
<parent pos="3" />
<child pos="1" />
</linkage>
</connection>
<connection id="4" parent="2" child="5">
<linkage id="4" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
<connection id="5" parent="5" child="6">
<linkage id="5" parentType="o" childType="d">
<parent pos="3" />
<child pos="2" />
</linkage>
</connection>
<connection id="6" parent="6" child="7">
<linkage id="6" parentType="d" childType="n">
<parent pos="5" />
<child pos="1" />
</linkage>
</connection>
</linkages>
</sugar>
3D Structure Model1 - 5 of 7 entries with matching glycan part
Structure entry #3207:
a-D-Neup5Ac-(2-3)-b-D-Galp-(1-4)+
|
b-D-GlcpNAc-(1-3)-b-D-Galp-(1-1)-Ceramide
|
a-L-Fucp-(1-3)+
 |
 |
 |
 : 5 |
 |
Taxons |
Structure entry #3212:
a-L-Fucp-(1-4/3)+
|
b-D-GlcpNAc-(1-3)-b-D-Galp
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a-D-Neup5Ac-(2-3)-b-D-Galp-(1-3/4)+
|
|
|
: 1 |
|
Taxons |
Structure entry #15434:
a-D-Neup5Ac-(2-3)-b-D-Galp-(1-4)+
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b-D-GlcpNAc-(1-3)-b-D-Galp-(1-1)-Ethyl
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a-L-Fucp-(1-3)+
|
|
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: 2 |
|
Taxons |
Structure entry #15446:
a-D-Neup5Ac-(2-3)-b-D-Galp-(1-4)+
|
b-D-GlcpNAc-(1-4)-b-D-Galp-(1-4)+
| |
a-L-Fucp-(1-3)+ |
butane-1,4-diol
a-D-Neup5Ac-(2-3)-b-D-Galp-(1-4)+ |
| |
b-D-GlcpNAc-(1-3)-b-D-Galp-(1-1)+
|
a-L-Fucp-(1-3)+
|
|
|
: 1 |
|
Taxons |
Structure entry #15447:
a-D-Neup5Ac-(2-3)-b-D-Galp-(1-4)+
|
b-D-GlcpNAc-(1-4)-b-D-Galp-(1-5)+
| |
a-L-Fucp-(1-3)+ |
pentane-1,5-diol
a-D-Neup5Ac-(2-3)-b-D-Galp-(1-4)+ |
| |
b-D-GlcpNAc-(1-3)-b-D-Galp-(1-1)+
|
a-L-Fucp-(1-3)+
|
|
|
: 1 |
|
Taxons |
- Sialyl Lewis X (Show) (Search Database)
| Chemical Formula: | C37H62N2O28 | #C | #H | #O | #N | |
| Molec. Weight: | 982 | 37 | 62 | 28 | 2 | |
| # Atoms: | 129 | |||||
| # Residues: | 5 | |||||
| # Heavy Atoms: | 67 | |||||
Superclasses:
|
Residues:
|
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PDB references: 11 - 1 of 1 PDB entries
PDB ID 6jjn:
Crystal structure of Mumps virus hemagglutinin-neuraminidase bound to sialyl lewisX
Description: HN protein
Source: Mumps rubulavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5Å
Release date: 2019-05-22
Entry features 3 distinct glycan structures [10 instances].
Literature references: 61 - 5 of 6 literature references
Reference #22043
Bleuler-Martinez S; Varrot A; Olieric V; Schubert M; Vogt E; Fetz C; Wohlschlager T; Plaza DF; Wälti M; Duport Y; Capitani G; Aebi M; Künzler M
Structure-function relationship of a novel fucoside-binding fruiting body lectin from Coprinopsis cinerea exhibiting nematotoxic activity.
Published 2022 in Glycobiology, 32: 600-615
Reference contains 27 structures
Reference #21133
Li SS; Ip CKM; Tang MYH; Tang MKS; Tong Y; Zhang J; Hassan AA; Mak ASC; Yung S; Chan TM; Ip PP; Lee CL; Chiu PCN; Lee LTO; Lai HC; Zeng JZ; Shum HC; Wong AST
Sialyl Lewis-P-selectin cascade mediates tumor-mesothelial adhesion in ascitic fluid shear flow.
Published 2019 in Nat Commun, 10: 2406
Reference contains 1 structure
Reference #20857
Sletmoen M; Gerken TA; Stokke BT; Burchell J; Brewer CF
Tn and STn are members of a family of carbohydrate tumor antigens that possess carbohydrate-carbohydrate interactions.
Published 2018 in Glycobiology, 28: 437-442
Reference contains 13 structures
Reference #7889
Ito K; Handa K; Hakomori SI
Species-specific expression of sialosyl-Lex on polymorphonuclear leukocytes (PMN), in relation to selectin-dependent PMN responses
Published 1994 in Glycoconj J, 11: 232-237
Reference contains 5 structures
Reference #9949
Larkin M; Ahern TJ; Stoll MS; Shaffer M; Sako D; O'Brien J; Yuen CT; Lawson AM; Childs RA; Barone KM; Langer-Safer PR; Hasegawa A; Kiso M; Larsen GR; Feizi T
Spectrum of sialylated and nonsialylated fuco-oligosaccharides bound by the endothelial-leukocyte adhesion molecule E-selectin. Dependence of the carbohydrate binding activity on E-selectin density
Published 1992 in J Biol Chem, 267: 13661-13668
Reference contains 5 structures
| NCBI Taxonomy ID | Scientific Name |
| 9606 | Homo sapiens |
Consortium for Functional Glycomics (CFG):
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