Glycosciences.de - Glycosciences.DB entry 5995

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Glycosciences.DB structure entry #5995:

Format: CarbBank LINUCS GlycoCT_condensed GlycoCT_xml


                a-L-Fucp-(1-4)+
                              |
                         b-D-GlcpNAc-(1-1)-Methyl
                              |
 a-L-Fucp-(1-2)-b-D-Galp-(1-3)+


RES
1s:methyl
2b:b-dglc-HEX-1:5
3s:n-acetyl
4b:b-dgal-HEX-1:5
5b:a-lgal-HEX-1:5|6:d
6b:a-lgal-HEX-1:5|6:d
LIN
1:1n(1+1)2o
2:2d(2+1)3n
3:2o(3+1)4d
4:4o(2+1)5d
5:2o(4+1)6d


<?xml version="1.0" encoding="UTF-8"?>
 <sugar version="1.0">
 <residues>
 <substituent id="1" name="methyl" />
 <basetype id="2" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
 <stemtype id="1" type="dglc" />
 </basetype>
 <substituent id="3" name="n-acetyl" />
 <basetype id="4" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
 <stemtype id="1" type="dgal" />
 </basetype>
 <basetype id="5" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-lgal-HEX-1:5|6:d">
 <stemtype id="1" type="lgal" />
 <modification type="d" pos_one="6" />
 </basetype>
 <basetype id="6" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-lgal-HEX-1:5|6:d">
 <stemtype id="1" type="lgal" />
 <modification type="d" pos_one="6" />
 </basetype>
 </residues>
 <linkages>
 <connection id="1" parent="1" child="2">
 <linkage id="1" parentType="n" childType="o">
 <parent pos="1" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="2" parent="2" child="3">
 <linkage id="2" parentType="d" childType="n">
 <parent pos="2" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="3" parent="2" child="4">
 <linkage id="3" parentType="o" childType="d">
 <parent pos="3" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="4" parent="4" child="5">
 <linkage id="4" parentType="o" childType="d">
 <parent pos="2" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="5" parent="2" child="6">
 <linkage id="5" parentType="o" childType="d">
 <parent pos="4" />
 <child pos="1" />
 </linkage>
 </connection>
 </linkages>
 </sugar>

Corresponding entries: 7

1 - 5 of 7 entries with matching glycan part

Structure entry #374:

a-L-Fucp-(1-4)+ | b-D-GlcpNAc-(1-9)-9-hydroxy-Nonanoate-(1-1)-Methyl | a-L-Fucp-(1-2)-b-D-Galp-(1-3)+

13C: 1

: 4

Taxons: 1

Structure entry #1133: LewisB tetrasaccharide (beta-anomeric form)

a-L-Fucp-(1-4)+ | b-D-GlcpNAc | a-L-Fucp-(1-2)-b-D-Galp-(1-3)+

: 3

: 50

Taxons: 4

Structure entry #3991: LewisB tetrasaccharide linked to Bovine Serum Albumin (BSA)

a-L-Fucp-(1-4)+ | b-D-GlcpNAc-(1-O)-<BSA> | a-L-Fucp-(1-2)-b-D-Galp-(1-3)+

: 1

Taxons

Structure entry #4563:

a-L-Fucp-(1-4)+ | b-D-GlcpNAc-(1-7)-benzyl | a-L-Fucp-(1-2)-b-D-Galp-(1-3)+

: 1

Taxons

Structure entry #6519:

a-L-Fucp-(1-4)+ | b-D-GlcpNAc-(1-9)-9-hydroxy-Nonanoate | a-L-Fucp-(1-2)-b-D-Galp-(1-3)+

Taxons

Lewis B (Show) (Search Database)

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General Structure Data

Chemical Formula:	C₂₇H₄₇N₁O₁₉	#C	#H	#O	#N
Molec. Weight:	689	27	47	19	1
# Atoms:	94
# Residues:	5
# Heavy Atoms:	47

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Composition

Superclasses:

Hex		Other
Hex	1	Me	1
dHex	2
HexNAc	1

Residues:

Residue	Count
A-L-FUCP	2
B-D-GALP	1
B-D-GLCPNAC	1
METHYL	1

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PDB references: 1

1 - 1 of 1 PDB entries

PDB ID 1led: STRUCTURES OF THE LECTIN IV OF GRIFFONIA SIMPLICIFOLIA AND ITS COMPLEX WITH THE LEWIS B HUMAN BLOOD GROUP DETERMINANT AT 2.0 ANGSTROMS RESOLUTION

Description: LECTIN (FOURTH ISOLATED FROM (GRIFFONIA SIMPLICIFOLIA)) COMPLEX WITH LEWIS B HUMAN BLOOD GROUP DETERMINANT (GS4LEB)

Source: GRIFFONIA SIMPLICIFOLIA

Experimental method: X-RAY DIFFRACTION

Resolution: 2Å

Release date: 1994-01-31

Entry features 2 distinct glycan structures [2 instances].

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Literature references: 9