- ☰
- Add title
- Add keywords
- Add publication
- Leave comment
Glycosciences.DB structure entry #548: N-Glycan fragment GlcNAc2
b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn
[][ASN]{[(4+1)][B-D-GLCPNAC]{[(4+1)][B-D-GLCPNAC]{}}}
<?xml version="1.0" encoding="UTF-8"?>
<sugar version="1.0">
<residues>
<basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="2" name="n-acetyl" />
<basetype id="3" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="4" name="n-acetyl" />
</residues>
<linkages>
<connection id="1" parent="1" child="2">
<linkage id="1" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="2" parent="1" child="3">
<linkage id="2" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
<connection id="3" parent="3" child="4">
<linkage id="3" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
</linkages>
<aglyca>
<historicalData>
<entry id="0" name="ASN" toResidue="1">
<linkage parentType="n" childType="x">
<parent pos="4" />
<child pos="1" />
</linkage>
</entry>
</historicalData>
</aglyca>
</sugar>
3D Structure Model1 - 5 of 18 entries with matching glycan part
Structure entry #552:
b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn-(1-2)-Phe-(1-2)-Thr
 |
 |
 |
 : 2 |
 |
Taxons |
Structure entry #553:
b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn-(1-2)-Ala-(1-2)-Thr-(1-2)-Ala-(1-2)-Ser
|
|
|
: 2 |
|
Taxons |
Structure entry #596:
b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)+
|
Asn-(1-2)-Lys-(1-2)-Thr-(1-2)-Leu-(1-2)-Met
|
Gly-(1-2)-Lys-(1-2)-Ala-(1-2)-Tyr-(1-2)-Thr-(1-2)-Ile-(1-2)-Phe-(1-2)+
 |
|
|
: 1 |
|
Taxons |
Structure entry #1928:
b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-O)-dolichol-PP
|
|
|
: 5 |
|
Taxons |
Structure entry #2209:
b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn-(2-1)-Acetate
|
|
|
: 1 |
|
Taxons |
| Chemical Formula: | C20H34N4O12 | #C | #H | #O | #N | |
| Molec. Weight: | 522 | 20 | 34 | 12 | 4 | |
| # Atoms: | 70 | |||||
| # Residues: | 3 | |||||
| # Heavy Atoms: | 36 | |||||
Superclasses:
|
Residues:
|
||||||||||
PDB references: 40041 - 5 of 4004 PDB entries
PDB ID 7xve:
Human Nav1.7 mutant class-I
Description:
Source: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Release date: 2022-08-10
Entry features 2 distinct glycan structures [9 instances].
PDB ID 7xvf:
Nav1.7 mutant class2
Description:
Source: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Release date: 2022-08-10
Entry features 2 distinct glycan structures [9 instances].
PDB ID 7zu8:
Crystal Structure of the zymogen form of the glutamic-class prolyl-endopeptidase neprosin at 2.05 A resolution in presence of the crystallophore Lu-Xo4.
Description:
Source: Nepenthes ventricosa x Nepenthes alata
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05Å
Release date: 2022-08-10
Entry features 2 distinct glycan structures [2 instances].
PDB ID 7zva:
Crystal Structure of the native zymogen form of the glutamic-class prolyl-endopeptidase neprosin at 1.80 A resolution.
Description:
Source: Nepenthes ventricosa x Nepenthes alata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8Å
Release date: 2022-08-10
Entry features 2 distinct glycan structures [2 instances].
PDB ID 7t9m:
Human Thyrotropin receptor bound by CS-17 Inverse Agonist Fab/Org 274179-0 Antagonist
Description:
Source: MUS MUSCULUS, Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Release date: 2022-08-10
Entry features 2 distinct glycan structures [4 instances].
Literature references: 61 - 5 of 6 literature references
Reference #21726
Tjondro HC; Ugonotti J; Kawahara R; Chatterjee S; Loke I; Chen S; Soltermann F; Hinneburg H; Parker BL; Venkatakrishnan V; Dieckmann R; Grant OC; Bylund J; Rodger A; Woods RJ; Karlsson-Bengtsson A; Struwe WB; Thaysen-Andersen M
Hyper-truncated Asn355- and Asn391-glycans modulate the activity of neutrophil granule myeloperoxidase.
Published 2021 in J Biol Chem, 296: 100144
Reference contains 20 structures
Reference #21166
Bello-Gil D; Audebert C; Olivera-Ardid S; Pérez-Cruz M; Even G; Khasbiullina N; Gantois N; Shilova N; Merlin S; Costa C; Bovin N; Mañez R
The Formation of Glycan-Specific Natural Antibodies Repertoire in GalT-KO Mice Is Determined by Gut Microbiota.
Published 2019 in Front Immunol, 10: 342
Reference contains 32 structures
Reference #100
Garg HG; Von dem Bruch K; Kunz H
Developments in the synthesis of glycopeptides containing glycosyl L-asparagine, L-serine, and L-threonine
Published 1994 in Adv Carbohydr Chem Biochem, 50: 277-310
Reference contains 59 structures
Reference #1363
Piskarev VE; Navratil J; Karaskova H; Bezouska K; Kocourek J
Interaction of egg-white glycoproteins and their oligosaccharides with the monomer and the hexamer of chicken liver lectin
Published 1990 in Biochem J, 270: 755-760
Reference contains 14 structures
Reference #3606
Nomoto H; Endo T; Inoue Y
Preparation and characterization of fragment glycoasparagines from ovalbumin glycopeptides: reference compounds for structural and biochemical studies of the oligo-mannose and hybrid types of carbohydrate chains of glycoproteins
Published 1982 in Carbohydr Res, 107: 91-101
Reference contains 9 structures
1 - 5 of 1444 literature references from PDB entries
Reference #22422
Wang A; Zhou F; Liu C; Gao D; Qi R; Yin Y; Liu S; Gao Y; Fu L; Xia Y; Xu Y; Wang C; Liu Z
Structure of infective Getah virus at 2.8 Å resolution determined by cryo-electron microscopy.
Published 2022 in Cell Discov, 8: 12
Reference #22042
Cozier GE; Newby EC; Schwager SLU; Isaac RE; Sturrock ED; Acharya KR
Structural basis for the inhibition of human angiotensin-1 converting enzyme by fosinoprilat.
Published 2022 in FEBS J, :
Reference #22427
Fenwick C; Turelli P; Ni D; Perez L; Lau K; Herate C; Marlin R; Lana E; Pellaton C; Raclot C; Esteves-Leuenberger L; Campos J; Farina A; Fiscalini F; Dereuddre-Bosquet N; Relouzat F; Abdelnabi R; Foo CS; Neyts J; Leyssen P; Lévy Y; Pojer F; Stahlberg H;
Patient-derived monoclonal antibody neutralizes SARS-CoV-2 Omicron variants and confers full protection in monkeys.
Published 2022 in Nat Microbiol, :
Reference #21953
Kanai R; Cornelius F; Vilsen B; Toyoshima C
Cryoelectron microscopy of Na,K-ATPase in the two E2P states with and without cardiotonic steroids.
Published 2022 in Proc Natl Acad Sci U S A, 119: e2123226119
Reference #22436
Del Amo-Maestro L; Mendes SR; Rodríguez-Banqueri A; Garzon-Flores L; Girbal M; Rodríguez-Lagunas MJ; Guevara T; Franch À; Pérez-Cano FJ; Eckhard U; Gomis-Rüth FX
Molecular and in vivo studies of a glutamate-class prolyl-endopeptidase for coeliac disease therapy.
Published 2022 in Nat Commun, 13: 4446
| NCBI Taxonomy ID | Scientific Name |
| 9913 | Bos taurus |
Consortium for Functional Glycomics (CFG):
×
Add title to glycan structure entry:
×
Add keyword to glycan structure entry:
×
Add publication to glycan structure entry:
×