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Glycosciences.DB structure entry #4184:
b-D-Galp-(1-4)-b-D-GlcpNAc-(1-3)-b-D-Galp
[][B-D-GALP]{[(3+1)][B-D-GLCPNAC]{[(4+1)][B-D-GALP]{}}}
RES
1b:b-dgal-HEX-1:5
2b:b-dglc-HEX-1:5
3s:n-acetyl
4b:b-dgal-HEX-1:5
LIN
1:1o(3+1)2d
2:2d(2+1)3n
3:2o(4+1)4d
<?xml version="1.0" encoding="UTF-8"?>
<sugar version="1.0">
<residues>
<basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
<stemtype id="1" type="dgal" />
</basetype>
<basetype id="2" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="3" name="n-acetyl" />
<basetype id="4" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
<stemtype id="1" type="dgal" />
</basetype>
</residues>
<linkages>
<connection id="1" parent="1" child="2">
<linkage id="1" parentType="o" childType="d">
<parent pos="3" />
<child pos="1" />
</linkage>
</connection>
<connection id="2" parent="2" child="3">
<linkage id="2" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="3" parent="2" child="4">
<linkage id="3" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
</linkages>
</sugar>
3D Structure Model1 - 5 of 5 entries with matching glycan part
Structure entry #2571:
b-D-Galp-(1-4)-b-D-GlcpNAc-(1-3)-b-D-Galp-(1-9)-9-hydroxy-Nonanoate-(1-1)-Methyl
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 : 3 |
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Taxons |
Structure entry #2855:
b-D-Galp-(1-4)-b-D-GlcpNAc-(1-3)-b-D-Galp-(1-1)-Methyl
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: 6 |
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Taxons |
Structure entry #6500:
b-D-Galp-(1-4)-b-D-GlcpNAc-(1-3)-b-D-Galp-(1-1)-<2,2,2-trichloroethanol>
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: 1 |
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Taxons |
Structure entry #9118:
b-D-Galp-(1-4)-b-D-GlcpNAc-(1-3)-b-D-Galp-(1-1)-<4-nitrophenol>
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: 2 |
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Taxons |
Structure entry #15435:
b-D-Galp-(1-4)-b-D-GlcpNAc-(1-3)-b-D-Galp-(1-6)-<6-hydroxy-hexanoate-hydrazide>
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: 1 |
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Taxons |
- Lactosamine (Show) (Search Database)
| Chemical Formula: | C20H35N1O16 | #C | #H | #O | #N | |
| Molec. Weight: | 545 | 20 | 35 | 16 | 1 | |
| # Atoms: | 72 | |||||
| # Residues: | 3 | |||||
| # Heavy Atoms: | 37 | |||||
Superclasses:
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Residues:
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PDB references: 21 - 2 of 2 PDB entries
PDB ID 2xrs:
Crystal structures exploring the origins of the broader specificity of escherichia coli heat-labile enterotoxin compared to cholera toxin
Description: HEAT-LABILE ENTEROTOXIN B CHAIN
Source: ESCHERICHIA COLI
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81Å
Release date: 2010-12-08
Entry features 5 distinct glycan structures [10 instances].
Description:
Source:
Experimental method: X-ray Diffraction
Resolution: 1.85Å
Release date:
Entry features 3 distinct glycan structures [7 instances].
Conformational maps: 4
Map ID: 8352
Disaccharide Fragment: b-D-Galp-(1-4)-b-D-GlcpNAc
Linkage Path: 34
Method: MD MM3(1996) Tinker 4 HTMD, 1000K, 30ns
Map ID: 8353
Disaccharide Fragment: b-D-GlcpNAc-(1-3)-b-D-Galp
Linkage Path: 3
Method: MD MM3(1996) Tinker 4 HTMD, 1000K, 30ns
Map ID: 8425
Disaccharide Fragment: b-D-Galp-(1-4)-b-D-GlcpNAc
Linkage Path: 34
Method: MD MM3(1996) Tinker 4 HTMD, 1000K, 30ns
Map ID: 8426
Disaccharide Fragment: b-D-GlcpNAc-(1-3)-b-D-Galp
Linkage Path: 3
Method: MD MM3(1996) Tinker 4 HTMD, 1000K, 30ns
Literature references: 51 - 5 of 5 literature references
Reference #7598
Yang JM; Byrd JC; Siddiki BB; Chung YS; Okuno M; Sowa M; Kim YS; Matta KL; Brockhausen I
Alterations of O-glycan biosynthesis in human colon cancer tissues
Published 1994 in Glycobiology, 4: 873-884
Reference contains 19 structures
Reference #7889
Ito K; Handa K; Hakomori SI
Species-specific expression of sialosyl-Lex on polymorphonuclear leukocytes (PMN), in relation to selectin-dependent PMN responses
Published 1994 in Glycoconj J, 11: 232-237
Reference contains 5 structures
Reference #12345
Linder TE; Lim DJ; DeMaria TF
Changes in the structure of the cell surface carbohydrates of the chinchilla tubotympanum following Streptococcus pneumoniae-induced otitis media
Published 1992 in Microb Pathog, 13: 293-303
Reference contains 1 structure
Reference #8085
Nakayama J; Ota H; Katsuyama T; Kanai M; Taki T; Hirabayashi Y; Suzuki Y
Immunohistochemical demonstration of glycoconjugates bearing the type 2 chain-backbone structure in human fetal, normal and neoplastic gastrointestinal tract
Published 1992 in Histochemistry, 97: 303-310
Reference contains 8 structures
Reference #1707
Endo T; Kasahara M; Kobata A
Structures of the asparagine-linked sugar chain of glucose transporter from human erythrocytes
Published 1990 in Biochemistry, 29: 9126-9134
Reference contains 8 structures
1 - 1 of 1 literature references from PDB entries
Reference #17729
Holmner A; Mackenzie A; Okvist M; Jansson L; Lebens M; Teneberg S; Krengel U
Crystal structures exploring the origins of the broader specificity of escherichia coli heat-labile enterotoxin compared to cholera toxin.
Published 2011 in J. Mol. Biol., 406: 387-402
| NCBI Taxonomy ID | Scientific Name |
| 9606 | Homo sapiens |
Consortium for Functional Glycomics (CFG):
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