Glycosciences.de - Glycosciences.DB entry 3589

☰
- Add title
- Add keywords
- Add publication
- Leave comment

Glycosciences.DB structure entry #3589:

■ Expand all ■ Collapse all

Format: CarbBank LINUCS GlycoCT_xml


 b-D-Galp-(1-3)-b-D-Galp-(1-4)-b-D-Xylp-(1-7)-<4-methylumbelliferone>


<?xml version="1.0" encoding="UTF-8"?>
 <sugar version="1.0">
 <residues>
 <basetype id="1" anomer="b" superclass="pen" ringStart="1" ringEnd="5" name="b-dxyl-PEN-1:5">
 <stemtype id="1" type="dxyl" />
 </basetype>
 <basetype id="2" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
 <stemtype id="1" type="dgal" />
 </basetype>
 <basetype id="3" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
 <stemtype id="1" type="dgal" />
 </basetype>
 </residues>
 <linkages>
 <connection id="1" parent="1" child="2">
 <linkage id="1" parentType="o" childType="d">
 <parent pos="4" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="2" parent="2" child="3">
 <linkage id="2" parentType="o" childType="d">
 <parent pos="3" />
 <child pos="1" />
 </linkage>
 </connection>
 </linkages>
 <aglyca>
 <historicalData>
 <entry id="0" name="&lt;4-METHYLUMBELLIFERONE&gt;" toResidue="1">
 <linkage parentType="n" childType="x">
 <parent pos="7" />
 <child pos="1" />
 </linkage>
 </entry>
 </historicalData>
 </aglyca>
 </sugar>

SNFG-style Graphics

Corresponding entries: 3

1 - 3 of 3 entries with matching glycan part

Structure entry #82: Proteoglycan linkage region trisaccharide attached to Ser

b-D-Galp-(1-3)-b-D-Galp-(1-4)-b-D-Xylp-(1-3)-Ser

NMR spectra

literature references

no GlycoMaps

Taxons

Structure entry #16011:

b-D-Galp-(1-3)-b-D-Galp-(1-4)-b-D-Xylp-(1-O)-<4-methylumbelliferone>

no 3d model

no NMR spectra

literature references

no GlycoMaps

Taxons

Structure entry #22962:

b-D-Galp-(1-3)-b-D-Galp-(1-4)-b-D-Xylp

no NMR spectra

no literature references

no Ref

no GlycoMaps

Taxons

General Structure Data

Chemical Formula:
Molec. Weight:
# Atoms:
# Residues:	4
# Heavy Atoms:

Superclasses:

Hex		Pent
Hex	2	Pent	1

Residues:

Residue	Count
<4-METHYLUMBELLIFERONE>	1
B-D-GALP	2
B-D-XYLP	1

Literature references: 2

1 - 2 of 2 literature references

Reference #10269

Shibata S; Takagaki K; Nakamura T; Izumi J; Kojima K; Kato I; Endo M

HNK-1-reactive novel oligosaccharide, sulfate-O-3GlcA.beta.1-4Xyl.beta.1-(4-methylumbelliferone), synthesized by cultured human skin fibroblasts

Published 1995 in J Biol Chem, 270: 13794-13798

Reference contains 6 structures

Reference #1429

Nakamura T; Izumi J; Takagaki K; Shibata S; Kojima K; Kato I; Endo M

A novel oligosaccharide, GlcA.beta.1-4Xyl.beta.1-(4-methylumbelliferone), synthesized by human cultured skin fibroblasts

Published 1994 in Biochem J, 304: 731-736

Reference contains 3 structures

NCBI Taxonomy ID	Scientific Name
9606	Homo sapiens

■ Expand all ■ Collapse all

© 2010-2016,2022 Justus-Liebig University Giessen, Institute of Veterinary Physiology and Biochemistry, Frankfurter Str. 100, 35392 Giessen, Germany
© 2017-2021 The Glycosciences.de crew
© 1997-2009 German Cancer Research Center Heidelberg, Central Spectroscopic Division, Im Neuenheimer Feld 280, 69120 Heidelberg, Germany
All rights reserved.