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Glycosciences.DB structure entry #27835: 6-sulfo sialyl Lewis X
a-D-Neup5Ac-(2-3)-b-D-Galp-(1-4)+
|
b-D-GlcpNAc6SO3
|
a-L-Fucp-(1-3)+
[][B-D-GLCPNAC6SO3]{[(3+1)][A-L-FUCP]{}[(4+1)][B-D-GALP]{[(3+2)][A-D-NEUP5AC]{}}}
RES
1b:b-dglc-HEX-1:5
2s:n-acetyl
3b:a-lgal-HEX-1:5|6:d
4b:b-dgal-HEX-1:5
5b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d
6s:n-acetyl
7s:sulfate
LIN
1:1d(2+1)2n
2:1o(3+1)3d
3:1o(4+1)4d
4:4o(3+2)5d
5:5d(5+1)6n
6:1o(6+1)7n
<?xml version="1.0" encoding="UTF-8"?>
<sugar version="1.0">
<residues>
<basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="2" name="n-acetyl" />
<basetype id="3" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-lgal-HEX-1:5|6:d">
<stemtype id="1" type="lgal" />
<modification type="d" pos_one="6" />
</basetype>
<basetype id="4" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
<stemtype id="1" type="dgal" />
</basetype>
<basetype id="5" anomer="a" superclass="non" ringStart="2" ringEnd="6" name="a-dgro-dgal-NON-2:6|1:a|2:keto|3:d">
<stemtype id="1" type="dgro" />
<stemtype id="2" type="dgal" />
<modification type="a" pos_one="1" />
<modification type="keto" pos_one="2" />
<modification type="d" pos_one="3" />
</basetype>
<substituent id="6" name="n-acetyl" />
<substituent id="7" name="sulfate" />
</residues>
<linkages>
<connection id="1" parent="1" child="2">
<linkage id="1" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="2" parent="1" child="3">
<linkage id="2" parentType="o" childType="d">
<parent pos="3" />
<child pos="1" />
</linkage>
</connection>
<connection id="3" parent="1" child="4">
<linkage id="3" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
<connection id="4" parent="4" child="5">
<linkage id="4" parentType="o" childType="d">
<parent pos="3" />
<child pos="2" />
</linkage>
</connection>
<connection id="5" parent="5" child="6">
<linkage id="5" parentType="d" childType="n">
<parent pos="5" />
<child pos="1" />
</linkage>
</connection>
<connection id="6" parent="1" child="7">
<linkage id="6" parentType="o" childType="n">
<parent pos="6" />
<child pos="1" />
</linkage>
</connection>
</linkages>
</sugar>

1 - 2 of 2 PDB entries

PDB ID 4unz:
Structure of the A_Equine_Newmarket_2_93 H3 haemagglutinin in complex with 6SO4-Sialyl Lewis X
Description: HAY SUBUNIT OF HAEMAGGLUTININ, H3 HAEMAGGLUTININ HA2 CHAIN
Source: INFLUENZA A VIRUS (A/EQ/NEWMARKET/93/(H3N8))
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9Å
Release date: 2014-07-23
Entry features 10 distinct glycan structures [21 instances].

PDB ID 4uo7:
Structure of the A_Canine_Colorado_17864_06 H3 haemagglutinin in complex with 6SO4 Sialyl Lewis X
Description: HAEMAGGLUTININ HA1, HAEMAGGLUTININ HA2
Source: INFLUENZA A VIRUS (A/CANINE/COLORADO/17864/2006(H3N8))
Experimental method: X-RAY DIFFRACTION
Resolution: 3Å
Release date: 2014-07-23
Entry features 6 distinct glycan structures [15 instances].
1 - 5 of 6 literature references

Reference #21582
D'Addio M; Frey J; Otto VI
The manifold roles of sialic acid for the biological functions of endothelial glycoproteins.
Published 2020 in Glycobiology, 30: 490-499
Reference contains 4 structures

Reference #20556
Bensing BA; Khedri Z; Deng L; Yu H; Prakobphol A; Fisher SJ; Chen X; Iverson TM; Varki A; Sullam PM
Novel aspects of sialoglycan recognition by the Siglec-like domains of streptococcal SRR glycoproteins.
Published 2016 in Glycobiology, 26: 1222-1234
Reference contains 11 structures

Reference #20704
Pröpster JM; Yang F; Rabbani S; Ernst B; Allain FH; Schubert M
Structural basis for sulfation-dependent self-glycan recognition by the human immune-inhibitory receptor Siglec-8.
Published 2016 in Proc. Natl. Acad. Sci. U.S.A., 113: E4170-9
Reference contains 6 structures

Reference #18928
Collins PJ; Vachieri SG; Haire LF; Ogrodowicz RW; Martin SR; Walker PA; Xiong X; Gamblin SJ; Skehel JJ
Recent evolution of equine influenza and the origin of canine influenza.
Published 2014 in Proc. Natl. Acad. Sci. U.S.A., 111: 11175-80
Reference contains 5 structures

Reference #20706
Kiwamoto T; Katoh T; Tiemeyer M; Bochner BS
The role of lung epithelial ligands for Siglec-8 and Siglec-F in eosinophilic inflammation.
Published 2013 in Curr Opin Allergy Clin Immunol, 13: 106-11
Reference contains 2 structures
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