a-D-GalpNAc-(1-3)+
|
a-D-Galp
|
a-L-Fucp-(1-2)+
[][A-D-GALP]{[(2+1)][A-L-FUCP]{}[(3+1)][A-D-GALPNAC]{}}
RES
1b:a-dgal-HEX-1:5
2b:a-lgal-HEX-1:5|6:d
3b:a-dgal-HEX-1:5
4s:n-acetyl
LIN
1:1o(2+1)2d
2:1o(3+1)3d
3:3d(2+1)4n
<?xml version="1.0" encoding="UTF-8"?>
<sugar version="1.0">
<residues>
<basetype id="1" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dgal-HEX-1:5">
<stemtype id="1" type="dgal" />
</basetype>
<basetype id="2" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-lgal-HEX-1:5|6:d">
<stemtype id="1" type="lgal" />
<modification type="d" pos_one="6" />
</basetype>
<basetype id="3" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dgal-HEX-1:5">
<stemtype id="1" type="dgal" />
</basetype>
<substituent id="4" name="n-acetyl" />
</residues>
<linkages>
<connection id="1" parent="1" child="2">
<linkage id="1" parentType="o" childType="d">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="2" parent="1" child="3">
<linkage id="2" parentType="o" childType="d">
<parent pos="3" />
<child pos="1" />
</linkage>
</connection>
<connection id="3" parent="3" child="4">
<linkage id="3" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
</linkages>
</sugar>
1 - 5 of 12 PDB entries
PDB ID 5zv5:
P domain of GII.17-2014/15 complexed with A-trisaccharide
Description: VP1
Source: Norovirus GII.17
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1Å
Release date: 2018-10-03
PDB ID 5zho:
Human group C rotavirus VP8*s recognize type A histo-blood group antigens as ligands
Description: Outer capsid protein VP8*
Source: Human rotavirus C
Experimental method: X-RAY DIFFRACTION
Resolution: 1.401Å
Release date: 2018-04-11
PDB ID 5lkc:
Protruding domain of GII.17 norovirus Kawasaki308 in complex with HBGA type A (triglycan)
Description: Major capsid protein
Source: Norovirus GII
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81Å
Release date: 2017-05-24
PDB ID 5iyp:
Protruding domain of GII.4 human norovirus CHDC2094 in complex with HBGA type A (triglycan)
Description: VP1
Source: Norovirus Hu/GII.4/CHDC2094/1974/US
Experimental method: X-RAY DIFFRACTION
Resolution: 1.27Å
Release date: 2017-04-05
PDB ID 5t54:
LECTIN FROM BAUHINIA FORFICATA IN COMPLEX WITH BLOOD GROUP A ANTIGEN
Description: Lectin
Source: Bauhinia forficata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65Å
Release date: 2016-12-28
3D Structure Model
PDB references: 12
Conformational maps: 2
Literature references: 1