- ☰
- Add title
- Add keywords
- Add publication
- Leave comment
Glycosciences.DB structure entry #274:
b-D-Galp-(1-4)-b-D-GlcpNAc-(1-2)-a-D-Manp-(1-6)+
|
b-D-Galp-(1-4)+ |
| b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn
b-D-GlcpNAc-(1-4)+ |
| | |
a-L-Fucp-(1-3)+ a-D-Manp-(1-3)+
|
b-D-Galp-(1-4)-b-D-GlcpNAc-(1-2)+
[][ASN]{[(4+1)][B-D-GLCPNAC]{[(4+1)][B-D-GLCPNAC]{[(4+1)][B-D-MANP]{[(3+1)][A-D-MANP]{[(2+1)][B-D-GLCPNAC]{[(4+1)][B-D-GALP]{}}[(4+1)][B-D-GLCPNAC]{[(3+1)][A-L-FUCP]{}[(4+1)][B-D-GALP]{}}}[(6+1)][A-D-MANP]{[(2+1)][B-D-GLCPNAC]{[(4+1)][B-D-GALP]{}}}}}}}
<?xml version="1.0" encoding="UTF-8"?>
<sugar version="1.0">
<residues>
<basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="2" name="n-acetyl" />
<basetype id="3" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="4" name="n-acetyl" />
<basetype id="5" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dman-HEX-1:5">
<stemtype id="1" type="dman" />
</basetype>
<basetype id="6" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dman-HEX-1:5">
<stemtype id="1" type="dman" />
</basetype>
<basetype id="7" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="8" name="n-acetyl" />
<basetype id="9" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
<stemtype id="1" type="dgal" />
</basetype>
<basetype id="10" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="11" name="n-acetyl" />
<basetype id="12" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-lgal-HEX-1:5|6:d">
<stemtype id="1" type="lgal" />
<modification type="d" pos_one="6" />
</basetype>
<basetype id="13" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
<stemtype id="1" type="dgal" />
</basetype>
<basetype id="14" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dman-HEX-1:5">
<stemtype id="1" type="dman" />
</basetype>
<basetype id="15" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="16" name="n-acetyl" />
<basetype id="17" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
<stemtype id="1" type="dgal" />
</basetype>
</residues>
<linkages>
<connection id="1" parent="1" child="2">
<linkage id="1" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="2" parent="1" child="3">
<linkage id="2" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
<connection id="3" parent="3" child="4">
<linkage id="3" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="4" parent="3" child="5">
<linkage id="4" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
<connection id="5" parent="5" child="6">
<linkage id="5" parentType="o" childType="d">
<parent pos="3" />
<child pos="1" />
</linkage>
</connection>
<connection id="6" parent="6" child="7">
<linkage id="6" parentType="o" childType="d">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="7" parent="7" child="8">
<linkage id="7" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="8" parent="7" child="9">
<linkage id="8" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
<connection id="9" parent="6" child="10">
<linkage id="9" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
<connection id="10" parent="10" child="11">
<linkage id="10" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="11" parent="10" child="12">
<linkage id="11" parentType="o" childType="d">
<parent pos="3" />
<child pos="1" />
</linkage>
</connection>
<connection id="12" parent="10" child="13">
<linkage id="12" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
<connection id="13" parent="5" child="14">
<linkage id="13" parentType="o" childType="d">
<parent pos="6" />
<child pos="1" />
</linkage>
</connection>
<connection id="14" parent="14" child="15">
<linkage id="14" parentType="o" childType="d">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="15" parent="15" child="16">
<linkage id="15" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="16" parent="15" child="17">
<linkage id="16" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
</linkages>
<aglyca>
<historicalData>
<entry id="0" name="ASN" toResidue="1">
<linkage parentType="n" childType="x">
<parent pos="4" />
<child pos="1" />
</linkage>
</entry>
</historicalData>
</aglyca>
</sugar>
3D Structure Model1 - 4 of 4 entries with matching glycan part
Structure entry #4949:
b-D-Galp-(1-4)-b-D-GlcpNAc-(1-2)-a-D-Manp-(1-6)+
|
b-D-Galp-(1-4)+ |
| b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)+
b-D-GlcpNAc-(1-4)+ | |
| | | Asn-(1-2)-Ala
a-L-Fucp-(1-3)+ a-D-Manp-(1-3)+ |
| Thr-(1-2)+
b-D-Galp-(1-4)-b-D-GlcpNAc-(1-2)+
 |
 |
 |
 : 1 |
 |
Taxons: 1 |
Structure entry #5729:
b-D-Galp-(1-4)-b-D-GlcpNAc-(1-2)-a-D-Manp-(1-6)+
|
b-D-Galp-(1-4)+ |
| b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-7)-<7-amino-4-methyl-2h-1-benzopyran-2-one>
b-D-GlcpNAc-(1-4)+ |
| | |
a-L-Fucp-(1-3)+ a-D-Manp-(1-3)+
|
b-D-Galp-(1-4)-b-D-GlcpNAc-(1-2)+
|
|
|
: 1 |
|
Taxons |
Structure entry #22991:
b-D-Galp-(1-4)-b-D-GlcpNAc-(1-2)-a-D-Manp-(1-6)+
|
b-D-Galp-(1-4)+ |
| b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc
b-D-GlcpNAc-(1-4)+ |
| | |
a-L-Fucp-(1-3)+ a-D-Manp-(1-3)+
|
b-D-Galp-(1-4)-b-D-GlcpNAc-(1-2)+
 |
|
|
no Ref |
|
Taxons |
Structure entry #25738:
b-D-Galp-(1-4)-b-D-GlcpNAc-(1-2)-a-D-Manp-(1-6)+
|
b-D-Galp-(1-4)+ |
| b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc
b-D-GlcpNAc-(1-4/2)+ |
| | |
a-L-Fucp-(1-3)+ a-D-Manp-(1-3)+
|
b-D-Galp-(1-4)-b-D-GlcpNAc-(1-2/4)+
|
|
|
no Ref |
|
Taxons |
- Lactosamine (Show) (2 x) (Search Database)
- N-glycan core (Show) (2 x) (Search Database)
- Lewis X (Show) (2 x) (Search Database)
| Chemical Formula: | C86H143N7O61 | #C | #H | #O | #N | |
| Molec. Weight: | 2250 | 86 | 143 | 61 | 7 | |
| # Atoms: | 297 | |||||
| # Residues: | 13 | |||||
| # Heavy Atoms: | 154 | |||||
Superclasses:
|
Residues:
|
||||||||||||||||||||||
NMR Proton Chemical Shift Info| MHz | 500 | ||||||
| Temperature | 300 | ||||||
| Solvent | D2O | ||||||
| Residue | Linkage | Proton | PPM | JFrom | JTo | Hz | Note |
| b-D-GlcpNAc | 4 | H1 | 5.071 | 0 | |||
| b-D-GlcpNAc | 4 | NAC | 2.013 | 0 | |||
| b-D-GlcpNAc | 4,4 | H1 | 4.616 | 0 | |||
| b-D-GlcpNAc | 4,4 | NAC | 2.078 | 0 | |||
| b-D-Manp | 4,4,4 | H1 | 4.756 | 0 | |||
| b-D-Manp | 4,4,4 | H2 | 4.212 | 0 | |||
| a-D-Manp | 6,4,4,4 | H1 | 4.925 | 0 | |||
| a-D-Manp | 6,4,4,4 | H2 | 4.112 | 0 | |||
| b-D-GlcpNAc | 2,6,4,4,4 | H1 | 4.580 | 0 | |||
| b-D-GlcpNAc | 2,6,4,4,4 | NAC | 2.045 | 0 | |||
| b-D-Galp | 4,2,6,4,4,4 | H1 | 4.474 | 0 | |||
| a-D-Manp | 3,4,4,4 | H1 | 5.116 | 0 | |||
| a-D-Manp | 3,4,4,4 | H2 | 4.219 | 0 | |||
| a-D-Manp | 3,4,4,4 | H3 | 4.038 | 0 | |||
| b-D-GlcpNAc | 4,3,4,4,4 | H1 | 4.557 | 0 | |||
| b-D-GlcpNAc | 4,3,4,4,4 | NAC | 2.067 | 0 | |||
| b-D-Galp | 4,4,3,4,4,4 | H1 | 4.447 | 0 | |||
| a-L-Fucp | 3,4,3,4,4,4 | H1 | 5.112 | 0 | |||
| a-L-Fucp | 3,4,3,4,4,4 | H5 | 4.835 | 0 | |||
| a-L-Fucp | 3,4,3,4,4,4 | CH3 | 1.176 | 0 | |||
| b-D-GlcpNAc | 2,3,4,4,4 | H1 | 4.568 | 0 | |||
| b-D-GlcpNAc | 2,3,4,4,4 | NAC | 2.049 | 0 | |||
| b-D-Galp | 4,2,3,4,4,4 | H1 | 4.464 | 0 | |||
Literature references: 11 - 1 of 1 literature references
Reference #96
Vliegenthart JFG; Dorland L; van Halbeek H
High-resolution, 1H-nuclear magnetic resonance spectroscopy as a tool in the structural analysis of carbohydrates related to glycoproteins
Published 1983 in Adv Carbohydr Chem Biochem, 41: 209-374
Reference contains 72 structures
| NCBI Taxonomy ID | Scientific Name |
| 9606 | Homo sapiens |
Consortium for Functional Glycomics (CFG):
×
Add title to glycan structure entry:
×
Add keyword to glycan structure entry:
×
Add publication to glycan structure entry:
×