b-D-Galp-(1-3)-b-D-GalpNAc-(1-4)+
|
b-D-Galp-(1-4)-b-D-Glcp
|
a-D-Neup5Ac-(2-3)+
[][B-D-GLCP]{[(4+1)][B-D-GALP]{[(3+2)][A-D-NEUP5AC]{}[(4+1)][B-D-GALPNAC]{[(3+1)][B-D-GALP]{}}}}
RES
1b:b-dglc-HEX-1:5
2b:b-dgal-HEX-1:5
3b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d
4s:n-acetyl
5b:b-dgal-HEX-1:5
6s:n-acetyl
7b:b-dgal-HEX-1:5
LIN
1:1o(4+1)2d
2:2o(3+2)3d
3:3d(5+1)4n
4:2o(4+1)5d
5:5d(2+1)6n
6:5o(3+1)7d
<?xml version="1.0" encoding="UTF-8"?>
<sugar version="1.0">
<residues>
<basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<basetype id="2" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
<stemtype id="1" type="dgal" />
</basetype>
<basetype id="3" anomer="a" superclass="non" ringStart="2" ringEnd="6" name="a-dgro-dgal-NON-2:6|1:a|2:keto|3:d">
<stemtype id="1" type="dgro" />
<stemtype id="2" type="dgal" />
<modification type="a" pos_one="1" />
<modification type="keto" pos_one="2" />
<modification type="d" pos_one="3" />
</basetype>
<substituent id="4" name="n-acetyl" />
<basetype id="5" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
<stemtype id="1" type="dgal" />
</basetype>
<substituent id="6" name="n-acetyl" />
<basetype id="7" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
<stemtype id="1" type="dgal" />
</basetype>
</residues>
<linkages>
<connection id="1" parent="1" child="2">
<linkage id="1" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
<connection id="2" parent="2" child="3">
<linkage id="2" parentType="o" childType="d">
<parent pos="3" />
<child pos="2" />
</linkage>
</connection>
<connection id="3" parent="3" child="4">
<linkage id="3" parentType="d" childType="n">
<parent pos="5" />
<child pos="1" />
</linkage>
</connection>
<connection id="4" parent="2" child="5">
<linkage id="4" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
<connection id="5" parent="5" child="6">
<linkage id="5" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="6" parent="5" child="7">
<linkage id="6" parentType="o" childType="d">
<parent pos="3" />
<child pos="1" />
</linkage>
</connection>
</linkages>
</sugar>
1 - 5 of 22 entries with matching glycan part
Structure entry #142: Glycosphingolipid GM1 / GM1a
b-D-Galp-(1-3)-b-D-GalpNAc-(1-4)+
|
b-D-Galp-(1-4)-b-D-Glcp-(1-1)-Ceramide
|
a-D-Neup5Ac-(2-3)+
Structure entry #765:
b-D-Galp-(1-3)-b-D-GalpNAc-(1-4)+
|
b-D-Galp-(1-4)-b-D-Glcp-(1-1)-<2-D-erythro-2-acetamide-octadec-4E-en-1,3-diol>
|
a-D-Neup5Ac-(2-3)+
Structure entry #766:
b-D-Galp-(1-3)-b-D-GalpNAc-(1-4)+
|
b-D-Galp-(1-4)-b-D-Glcp-(1-1)-sphingosine-(2-1)-<2-chloroacetate>
|
a-D-Neup5Ac-(2-3)+
Structure entry #2875:
b-D-Galp-(1-3)-b-D-GalpNAc-(1-4)+
|
b-D-Galp-(1-4)-b-D-Glcp-(1-1)-hexyl
|
a-D-Neup5Ac-(2-3)+
Structure entry #3946:
b-D-Galp-(1-3)-b-D-GalpNAc-(1-4)+
|
b-D-Galp-(1-4)-b-D-Glcp-(1-1)-2R-amino-Octadec-4E-en-1,3S-diol
|
a-D-Neup5Ac-(2-3)+
1 - 5 of 15 PDB entries
PDB ID 6wlw:
The Vo region of human V-ATPase in state 1 (focused refinement)
Description: V-type proton ATPase 116 kDa subunit a isoform 1, V-type proton ATPase subunit S1, Renin receptor, V-type proton ATPase 21 kDa proteolipid subunit, V-type proton ATPase 16 kDa proteolipid subunit, V-type proton ATPase subunit d 1, V-type proton ATPase sub
Source: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Release date: 2020-11-11
PDB ID 6wm2:
Human V-ATPase in state 1 with SidK and ADP
Description: V-type proton ATPase 116 kDa subunit a isoform 1, V-type proton ATPase subunit C 1, V-type proton ATPase subunit E 1, V-type proton ATPase subunit G 1, V-type proton ATPase subunit e 1, Ribonuclease kappa (E.C.3.1.-.-), V-type proton ATPase subunit H, V-t
Source: Homo sapiens, Legionella pneumophila
Experimental method: ELECTRON MICROSCOPY
Release date: 2020-11-11
PDB ID 5n0c:
Crystal structure of the tetanus neurotoxin in complex with GM1a
Description: Tetanus toxin (E.C.3.4.24.68)
Source: Clostridium tetani
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6Å
Release date: 2017-06-21
PDB ID 4zh1:
Complement factor H in complex with the GM1 glycan
Description: C3d, Complement factor H
Source: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24Å
Release date: 2016-01-13
PDB ID 4u60:
Trichodysplasia spinulosa-associated polyomavirus (TSPyV) VP1 in complex with GM1 oligosaccharide
Description: Trichodysplasia spinulosa-associated polyomavirus (TSPyV) VP1
Source: Trichodysplasia spinulosa-associated polyomavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5Å
Release date: 2015-08-05
3D Structure Model
: 1 
: 659 
PDB references: 15
Literature references: 101