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Glycosciences.DB structure entry #2677:
b-D-Galp-(1-3)-b-D-GalpNAc-(1-4)+
|
b-D-Galp-(1-4)-b-D-Glcp
|
a-D-Neup5Ac-(2-3)+
[][B-D-GLCP]{[(4+1)][B-D-GALP]{[(3+2)][A-D-NEUP5AC]{}[(4+1)][B-D-GALPNAC]{[(3+1)][B-D-GALP]{}}}}
RES
1b:b-dglc-HEX-1:5
2b:b-dgal-HEX-1:5
3b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d
4s:n-acetyl
5b:b-dgal-HEX-1:5
6s:n-acetyl
7b:b-dgal-HEX-1:5
LIN
1:1o(4+1)2d
2:2o(3+2)3d
3:3d(5+1)4n
4:2o(4+1)5d
5:5d(2+1)6n
6:5o(3+1)7d
<?xml version="1.0" encoding="UTF-8"?>
<sugar version="1.0">
<residues>
<basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<basetype id="2" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
<stemtype id="1" type="dgal" />
</basetype>
<basetype id="3" anomer="a" superclass="non" ringStart="2" ringEnd="6" name="a-dgro-dgal-NON-2:6|1:a|2:keto|3:d">
<stemtype id="1" type="dgro" />
<stemtype id="2" type="dgal" />
<modification type="a" pos_one="1" />
<modification type="keto" pos_one="2" />
<modification type="d" pos_one="3" />
</basetype>
<substituent id="4" name="n-acetyl" />
<basetype id="5" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
<stemtype id="1" type="dgal" />
</basetype>
<substituent id="6" name="n-acetyl" />
<basetype id="7" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
<stemtype id="1" type="dgal" />
</basetype>
</residues>
<linkages>
<connection id="1" parent="1" child="2">
<linkage id="1" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
<connection id="2" parent="2" child="3">
<linkage id="2" parentType="o" childType="d">
<parent pos="3" />
<child pos="2" />
</linkage>
</connection>
<connection id="3" parent="3" child="4">
<linkage id="3" parentType="d" childType="n">
<parent pos="5" />
<child pos="1" />
</linkage>
</connection>
<connection id="4" parent="2" child="5">
<linkage id="4" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
<connection id="5" parent="5" child="6">
<linkage id="5" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="6" parent="5" child="7">
<linkage id="6" parentType="o" childType="d">
<parent pos="3" />
<child pos="1" />
</linkage>
</connection>
</linkages>
</sugar>

1 - 5 of 22 entries with matching glycan part

b-D-Galp-(1-3)-b-D-GalpNAc-(1-4)+
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b-D-Galp-(1-4)-b-D-Glcp-(1-1)-Ceramide
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a-D-Neup5Ac-(2-3)+
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Taxons: 20 |

b-D-Galp-(1-3)-b-D-GalpNAc-(1-4)+
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b-D-Galp-(1-4)-b-D-Glcp-(1-1)-<2-D-erythro-2-acetamide-octadec-4E-en-1,3-diol>
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a-D-Neup5Ac-(2-3)+
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b-D-Galp-(1-3)-b-D-GalpNAc-(1-4)+
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b-D-Galp-(1-4)-b-D-Glcp-(1-1)-sphingosine-(2-1)-<2-chloroacetate>
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a-D-Neup5Ac-(2-3)+
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Taxons |

b-D-Galp-(1-3)-b-D-GalpNAc-(1-4)+
|
b-D-Galp-(1-4)-b-D-Glcp-(1-1)-hexyl
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a-D-Neup5Ac-(2-3)+
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Taxons |

b-D-Galp-(1-3)-b-D-GalpNAc-(1-4)+
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b-D-Galp-(1-4)-b-D-Glcp-(1-1)-2R-amino-Octadec-4E-en-1,3S-diol
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a-D-Neup5Ac-(2-3)+
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Taxons: 1 |
- GM1a (Show) (Search Database)
- GSL core, ganglio-type (Show) (Search Database)
Chemical Formula: | C37H62N2O29 | #C | #H | #O | #N | |
Molec. Weight: | 998 | 37 | 62 | 29 | 2 | |
# Atoms: | 130 | |||||
# Residues: | 5 | |||||
# Heavy Atoms: | 68 |
Superclasses:
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Residues:
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1 - 5 of 13 PDB entries

PDB ID 5n0c:
Crystal structure of the tetanus neurotoxin in complex with GM1a
Description: Tetanus toxin (E.C.3.4.24.68)
Source: Clostridium tetani
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6Å
Release date: 2017-06-21
Entry features 1 distinct glycan structures [2 instances].

PDB ID 4zh1:
Complement factor H in complex with the GM1 glycan
Description: C3d, Complement factor H
Source: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24Å
Release date: 2016-01-13
Entry features 3 distinct glycan structures [3 instances].

PDB ID 4u60:
Trichodysplasia spinulosa-associated polyomavirus (TSPyV) VP1 in complex with GM1 oligosaccharide
Description: Trichodysplasia spinulosa-associated polyomavirus (TSPyV) VP1
Source: Trichodysplasia spinulosa-associated polyomavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5Å
Release date: 2015-08-05
Entry features 3 distinct glycan structures [5 instances].

PDB ID 4x0z:
JC Polyomavirus genotype 3 VP1 in complex with GM1 oligosaccharide
Description: JC polyomavirus VP1 from a genotype 3 strain
Source: JC polyomavirus type 3
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85Å
Release date: 2015-04-22
Entry features 2 distinct glycan structures [3 instances].

PDB ID 4x14:
JC Mad-1 polyomavirus VP1 in complex with GM1 oligosaccharide
Description: JC Mad-1 polyomavirus VP1
Source: JC polyomavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3Å
Release date: 2015-04-22
Entry features 2 distinct glycan structures [3 instances].
1 - 5 of 101 literature references

Reference #21986
Zhang J; Zhang Z; Holst S; Blöchl C; Madunic K; Wuhrer M; Ten Dijke P; Zhang T
Transforming growth factor-β challenge alters the N-, O-, and glycosphingolipid glycomes in PaTu-S pancreatic adenocarcinoma cells.
Published 2022 in J Biol Chem, 298: 101717
Reference contains 26 structures

Reference #21972
Kato K; Yamaguchi T; Yagi-Utsumi M
Experimental and computational characterization of dynamic biomolecular interaction systems involving glycolipid glycans.
Published 2022 in Glycoconj J, 39: 219-228
Reference contains 6 structures

Reference #21775
Jayaprakash NG; Surolia A
Spike Protein and the Various Cell-Surface Carbohydrates: An Interaction Study.
Published 2021 in ACS Chem Biol, : epub ahead of print
Reference contains 32 structures

Reference #21776
Soares CO; Grosso AS; Ereño-Orbea J; Coelho H; Marcelo F
Molecular Recognition Insights of Sialic Acid Glycans by Distinct Receptors Unveiled by NMR and Molecular Modeling.
Published 2021 in Front Mol Biosci, 8: 727847
Reference contains 18 structures

Reference #19426
Blaum BS; Frank M; Walker RC; Neu U; Stehle T
Complement Factor H and Simian Virus 40 bind the GM1 ganglioside in distinct conformations.
Published 2016 in Glycobiology, 26: 532-9
Reference contains 3 structures
1 - 5 of 8 literature references from PDB entries

Reference #19302
Ströh LJ; Gee GV; Blaum BS; Dugan AS; Feltkamp MC; Atwood WJ; Stehle T
Trichodysplasia spinulosa-Associated Polyomavirus Uses a Displaced Binding Site on VP1 to Engage Sialylated Glycolipids.
Published 2015 in PLoS Pathog., 11: e1005112

Reference #18676
Ng NM; Littler DR; Paton AW; Le Nours J; Rossjohn J; Paton JC; Beddoe T
EcxAB is a founding member of a new family of metalloprotease AB5 toxins with a hybrid cholera-like B subunit.
Published 2013 in Structure, 21: 2003-13

Reference #17729
Holmner A; Mackenzie A; Okvist M; Jansson L; Lebens M; Teneberg S; Krengel U
Crystal structures exploring the origins of the broader specificity of escherichia coli heat-labile enterotoxin compared to cholera toxin.
Published 2011 in J. Mol. Biol., 406: 387-402

Reference #17971
Bian CF; Zhang Y; Sun H; Li DF; Wang DC
Structural basis for distinct binding properties of the human galectins to Thomsen-Friedenreich antigen.
Published 2011 in PLoS ONE, 6: e25007

Reference #17568
Feng L; Sun H; Zhang Y; Li DF; Wang DC
Structural insights into the recognition mechanism between an antitumor galectin AAL and the Thomsen-Friedenreich antigen.
Published 2010 in FASEB J., 24: 3861-8
Consortium for Functional Glycomics (CFG):
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