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Glycosciences.DB structure entry #26295:
a-D-Manp-(1-6)+
|
a-D-Manp-(1-6)-a-D-Manp
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a-D-Manp-(1-3)+
[][A-D-MANP]{[(6+1)][A-D-MANP]{[(3+1)][A-D-MANP]{}[(6+1)][A-D-MANP]{}}}
RES
1b:a-dman-HEX-1:5
2b:a-dman-HEX-1:5
3b:a-dman-HEX-1:5
4b:a-dman-HEX-1:5
LIN
1:1o(6+1)2d
2:2o(3+1)3d
3:2o(6+1)4d
<?xml version="1.0" encoding="UTF-8"?>
<sugar version="1.0">
<residues>
<basetype id="1" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dman-HEX-1:5">
<stemtype id="1" type="dman" />
</basetype>
<basetype id="2" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dman-HEX-1:5">
<stemtype id="1" type="dman" />
</basetype>
<basetype id="3" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dman-HEX-1:5">
<stemtype id="1" type="dman" />
</basetype>
<basetype id="4" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dman-HEX-1:5">
<stemtype id="1" type="dman" />
</basetype>
</residues>
<linkages>
<connection id="1" parent="1" child="2">
<linkage id="1" parentType="o" childType="d">
<parent pos="6" />
<child pos="1" />
</linkage>
</connection>
<connection id="2" parent="2" child="3">
<linkage id="2" parentType="o" childType="d">
<parent pos="3" />
<child pos="1" />
</linkage>
</connection>
<connection id="3" parent="2" child="4">
<linkage id="3" parentType="o" childType="d">
<parent pos="6" />
<child pos="1" />
</linkage>
</connection>
</linkages>
</sugar>
3D Structure Model1 - 1 of 1 entries with matching glycan part
Structure entry #26503:
a-D-Manp-(1-6)-a-D-Manp-(1-6)-a-D-Manp-(1-1)-Me
|
a-D-Manp-(1-3)+
 |
 13C: 1, 1H: 1 |
 |
 no Ref |
 |
Taxons |
Superclasses:
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Residues:
|
||||||||
PDB references: 31 - 3 of 3 PDB entries
PDB ID 2phx:
Pterocarpus angolensis lectin (PAL) in complex with Man-5
Description: Lectin
Source: Pterocarpus angolensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8Å
Release date: 2007-07-10
Entry features 2 distinct glycan structures [2 instances].
PDB ID 2i74:
Crystal structure of mouse Peptide N-Glycanase C-terminal domain in complex with mannopentaose
Description: PNGase (E.C.3.5.1.52)
Source: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75Å
Release date: 2006-10-24
Entry features 1 distinct glycan structures [2 instances].
PDB ID 1sl4:
Crystal Structure of DC-SIGN carbohydrate recognition domain complexed with Man4
Description: mDC-SIGN1B type I isoform
Source: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55Å
Release date: 2004-06-15
Entry features 1 distinct glycan structures [1 instances].
Conformational maps: 3
Map ID: 8985
Disaccharide Fragment: a-D-Manp-(1-6)-a-D-Manp
Linkage Path: 6
Method: MD MM3(1996) Tinker 4 HTMD, 1000K, 30ns
Map ID: 8986
Disaccharide Fragment: a-D-Manp-(1-3)-a-D-Manp
Linkage Path: 63
Method: MD MM3(1996) Tinker 4 HTMD, 1000K, 30ns
Map ID: 8987
Disaccharide Fragment: a-D-Manp-(1-6)-a-D-Manp
Linkage Path: 66
Method: MD MM3(1996) Tinker 4 HTMD, 1000K, 30ns
Literature references from PDB entries: 31 - 3 of 3 literature references from PDB entries
Reference #16866
Garcia-Pino A; Buts L; Wyns L; Imberty A; Loris R
How a plant lectin recognizes high mannose oligosaccharides.
Published 2007 in Plant Physiol., 144: 1733-41
Reference #16744
Zhou X; Zhao G; Truglio JJ; Wang L; Li G; Lennarz WJ; Schindelin H
Structural and biochemical studies of the C-terminal domain of mouse peptide-N-glycanase identify it as a mannose-binding module.
Published 2006 in Proc. Natl. Acad. Sci. U.S.A., 103: 17214-9
Reference #16468
Guo Y; Feinberg H; Conroy E; Mitchell DA; Alvarez R; Blixt O; Taylor ME; Weis WI; Drickamer K
Structural basis for distinct ligand-binding and targeting properties of the receptors DC-SIGN and DC-SIGNR.
Published 2004 in Nat. Struct. Mol. Biol., 11: 591-8
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