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Glycosciences.DB structure entry #2311: Blood group A trisaccharide (beta-anomeric form)

Format: CarbBank LINUCS GlycoCT_condensed GlycoCT_xml


 a-D-GalpNAc-(1-3)+
                  |
             b-D-Galp
                  |
    a-L-Fucp-(1-2)+


RES
1b:b-dgal-HEX-1:5
2b:a-lgal-HEX-1:5|6:d
3b:a-dgal-HEX-1:5
4s:n-acetyl
LIN
1:1o(2+1)2d
2:1o(3+1)3d
3:3d(2+1)4n


<?xml version="1.0" encoding="UTF-8"?>
 <sugar version="1.0">
 <residues>
 <basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
 <stemtype id="1" type="dgal" />
 </basetype>
 <basetype id="2" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-lgal-HEX-1:5|6:d">
 <stemtype id="1" type="lgal" />
 <modification type="d" pos_one="6" />
 </basetype>
 <basetype id="3" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dgal-HEX-1:5">
 <stemtype id="1" type="dgal" />
 </basetype>
 <substituent id="4" name="n-acetyl" />
 </residues>
 <linkages>
 <connection id="1" parent="1" child="2">
 <linkage id="1" parentType="o" childType="d">
 <parent pos="2" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="2" parent="1" child="3">
 <linkage id="2" parentType="o" childType="d">
 <parent pos="3" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="3" parent="3" child="4">
 <linkage id="3" parentType="d" childType="n">
 <parent pos="2" />
 <child pos="1" />
 </linkage>
 </connection>
 </linkages>
 </sugar>

download coordinates

Corresponding entries: 7

1 - 5 of 7 entries with matching glycan part

Structure entry #372:

a-D-GalpNAc-(1-3)+ | b-D-Galp-(1-9)-9-hydroxy-Nonanoate-(1-1)-Methyl | a-L-Fucp-(1-2)+

13C: 1

: 5

Taxons: 1

Structure entry #5986:

a-D-GalpNAc-(1-3)+ | b-D-Galp-(1-1)-Methyl | a-L-Fucp-(1-2)+

: 6

Taxons

Structure entry #6235:

a-D-GalpNAc-(1-3)+ | b-D-Galp-(1-1)-Ethanolamine-(2-9)-Nonan-1,9-dioate-(1-1)-Methyl | a-L-Fucp-(1-2)+

: 2

Taxons

Structure entry #7253: Blood group A trisaccharide (beta-anomeric form) linked to Asn

a-D-GalpNAc-(1-3)+ | b-D-Galp-(1-4)-Asn | a-L-Fucp-(1-2)+

: 1

Taxons: 1

Structure entry #22211:

a-D-GalpNAc-(1-3)+ | b-D-Galp-(1-9)-9-hydroxy-Nonanoate-(1-1)-Ethyl | a-L-Fucp-(1-2)+

Taxons

Blood Group A Antigen (Show) (Search Database)

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General Structure Data

Chemical Formula:	C₂₀H₃₅N₁O₁₅	#C	#H	#O	#N
Molec. Weight:	529	20	35	15	1
# Atoms:	71
# Residues:	3
# Heavy Atoms:	36

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Composition

Superclasses:

Hex
Hex	1
dHex	1
HexNAc	1

Residues:

Residue	Count
A-D-GALPNAC	1
A-L-FUCP	1
B-D-GALP	1

▴

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PDB references: 9

1 - 5 of 9 PDB entries

PDB ID 4d6e: Crystal structure of a family 98 glycoside hydrolase catalytic module (Sp3GH98) in complex with the blood group A-trisaccharide (X01 mutant)

Description: GLYCOSIDE HYDROLASE (E.C.3.2.1.102)

Source: STREPTOCOCCUS PNEUMONIAE

Experimental method: X-RAY DIFFRACTION

Resolution: 1.45Å

Release date: 2014-11-26

Entry features 1 distinct glycan structures [1 instances].

PDB ID 4ah4: Crystal Structure of Fucose binding lectin from Aspergillus Fumigatus (AFL) in complex with BGA Oligosaccharide.

Description: FUCOSE-SPECIFIC LECTIN FLEA

Source: ASPERGILLUS FUMIGATUS

Experimental method: X-RAY DIFFRACTION

Resolution: 1.75Å

Release date: 2013-02-20

Entry features 3 distinct glycan structures [12 instances].

PDB ID 3sld: Structural characterization of a GII.4 2004 norovirus variant (TCH05) bound to A trisaccharide

Description: Capsid

Source: Norovirus Hu/GII.4/2004/NL

Experimental method: X-RAY DIFFRACTION

Resolution: 2.679Å

Release date: 2011-07-13

Entry features 1 distinct glycan structures [8 instances].

PDB ID 3pa1: Crystal Structure of P Domain from Norwalk Virus Strain Vietnam 026 in complex with HBGA type A

Description: Capsid protein

Source: Norwalk virus

Experimental method: X-RAY DIFFRACTION

Resolution: 1.48Å

Release date: 2011-05-11

Entry features 1 distinct glycan structures [1 instances].

PDB ID 2wmi: Crystal structure of the catalytic module of a family 98 glycoside hydrolase from Streptococcus pneumoniae SP3-BS71 in complex with the A-trisaccharide blood group antigen.

Description: FUCOLECTIN-RELATED PROTEIN

Source: STREPTOCOCCUS PNEUMONIAE

Experimental method: X-RAY DIFFRACTION

Resolution: 1.9Å

Release date: 2009-07-14

Entry features 1 distinct glycan structures [2 instances].