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Glycosciences.DB structure entry #22988:
b-D-Galp-(1-4)-b-D-GlcpNAc-(1-6)+
|
a-D-Manp-(1-6)+
| |
b-D-Galp-(1-4)-b-D-GlcpNAc-(1-2)+ |
|
b-D-Galp-(1-4)+ b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc
| |
b-D-GlcpNAc-(1-4)+ |
| | |
a-L-Fucp-(1-3)+ a-D-Manp-(1-3)+
|
b-D-Galp-(1-4)-b-D-GlcpNAc-(1-2)+
[][B-D-GLCPNAC]{[(4+1)][B-D-GLCPNAC]{[(4+1)][B-D-MANP]{[(3+1)][A-D-MANP]{[(2+1)][B-D-GLCPNAC]{[(4+1)][B-D-GALP]{}}[(4+1)][B-D-GLCPNAC]{[(3+1)][A-L-FUCP]{}[(4+1)][B-D-GALP]{}}}[(6+1)][A-D-MANP]{[(2+1)][B-D-GLCPNAC]{[(4+1)][B-D-GALP]{}}[(6+1)][B-D-GLCPNAC]{[(4+1)][B-D-GALP]{}}}}}}
RES
1b:b-dglc-HEX-1:5
2s:n-acetyl
3b:b-dglc-HEX-1:5
4s:n-acetyl
5b:b-dman-HEX-1:5
6b:a-dman-HEX-1:5
7b:b-dglc-HEX-1:5
8s:n-acetyl
9b:b-dgal-HEX-1:5
10b:b-dglc-HEX-1:5
11s:n-acetyl
12b:a-lgal-HEX-1:5|6:d
13b:b-dgal-HEX-1:5
14b:a-dman-HEX-1:5
15b:b-dglc-HEX-1:5
16s:n-acetyl
17b:b-dgal-HEX-1:5
18b:b-dglc-HEX-1:5
19s:n-acetyl
20b:b-dgal-HEX-1:5
LIN
1:1d(2+1)2n
2:1o(4+1)3d
3:3d(2+1)4n
4:3o(4+1)5d
5:5o(3+1)6d
6:6o(2+1)7d
7:7d(2+1)8n
8:7o(4+1)9d
9:6o(4+1)10d
10:10d(2+1)11n
11:10o(3+1)12d
12:10o(4+1)13d
13:5o(6+1)14d
14:14o(2+1)15d
15:15d(2+1)16n
16:15o(4+1)17d
17:14o(6+1)18d
18:18d(2+1)19n
19:18o(4+1)20d
<?xml version="1.0" encoding="UTF-8"?>
<sugar version="1.0">
<residues>
<basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="2" name="n-acetyl" />
<basetype id="3" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="4" name="n-acetyl" />
<basetype id="5" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dman-HEX-1:5">
<stemtype id="1" type="dman" />
</basetype>
<basetype id="6" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dman-HEX-1:5">
<stemtype id="1" type="dman" />
</basetype>
<basetype id="7" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="8" name="n-acetyl" />
<basetype id="9" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
<stemtype id="1" type="dgal" />
</basetype>
<basetype id="10" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="11" name="n-acetyl" />
<basetype id="12" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-lgal-HEX-1:5|6:d">
<stemtype id="1" type="lgal" />
<modification type="d" pos_one="6" />
</basetype>
<basetype id="13" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
<stemtype id="1" type="dgal" />
</basetype>
<basetype id="14" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dman-HEX-1:5">
<stemtype id="1" type="dman" />
</basetype>
<basetype id="15" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="16" name="n-acetyl" />
<basetype id="17" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
<stemtype id="1" type="dgal" />
</basetype>
<basetype id="18" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="19" name="n-acetyl" />
<basetype id="20" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
<stemtype id="1" type="dgal" />
</basetype>
</residues>
<linkages>
<connection id="1" parent="1" child="2">
<linkage id="1" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="2" parent="1" child="3">
<linkage id="2" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
<connection id="3" parent="3" child="4">
<linkage id="3" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="4" parent="3" child="5">
<linkage id="4" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
<connection id="5" parent="5" child="6">
<linkage id="5" parentType="o" childType="d">
<parent pos="3" />
<child pos="1" />
</linkage>
</connection>
<connection id="6" parent="6" child="7">
<linkage id="6" parentType="o" childType="d">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="7" parent="7" child="8">
<linkage id="7" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="8" parent="7" child="9">
<linkage id="8" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
<connection id="9" parent="6" child="10">
<linkage id="9" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
<connection id="10" parent="10" child="11">
<linkage id="10" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="11" parent="10" child="12">
<linkage id="11" parentType="o" childType="d">
<parent pos="3" />
<child pos="1" />
</linkage>
</connection>
<connection id="12" parent="10" child="13">
<linkage id="12" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
<connection id="13" parent="5" child="14">
<linkage id="13" parentType="o" childType="d">
<parent pos="6" />
<child pos="1" />
</linkage>
</connection>
<connection id="14" parent="14" child="15">
<linkage id="14" parentType="o" childType="d">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="15" parent="15" child="16">
<linkage id="15" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="16" parent="15" child="17">
<linkage id="16" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
<connection id="17" parent="14" child="18">
<linkage id="17" parentType="o" childType="d">
<parent pos="6" />
<child pos="1" />
</linkage>
</connection>
<connection id="18" parent="18" child="19">
<linkage id="18" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="19" parent="18" child="20">
<linkage id="19" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
</linkages>
</sugar>
3D Structure Model1 - 1 of 1 entries with matching glycan part
Structure entry #275:
b-D-Galp-(1-4)-b-D-GlcpNAc-(1-6)+
|
a-D-Manp-(1-6)+
| |
b-D-Galp-(1-4)-b-D-GlcpNAc-(1-2)+ |
|
b-D-Galp-(1-4)+ b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn-(1-2)-Gly-(1-2)-Thr
| |
b-D-GlcpNAc-(1-4)+ |
| | |
a-L-Fucp-(1-3)+ a-D-Manp-(1-3)+
|
b-D-Galp-(1-4)-b-D-GlcpNAc-(1-2)+
 |
 1H: 1 |
 |
 : 5 |
 |
Taxons: 2 |
- Lewis X (Show) (Search Database)
- N-glycan core (Show) (Search Database)
- Lactosamine (Show) (Search Database)
Superclasses:
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Residues:
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Literature references: 11 - 1 of 1 literature references
Reference #20811
Sato T; Tateno H; Kaji H; Chiba Y; Kubota T; Hirabayashi J; Narimatsu H
Engineering of recombinant Wisteria floribunda agglutinin specifically binding to GalNAcβ1,4GlcNAc (LacdiNAc).
Published 2017 in Glycobiology, 27: 743–754
Reference contains 20 structures
Consortium for Functional Glycomics (CFG):
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