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Glycosciences.DB structure entry #229: N-Glycan fragment GlcNAc1
b-D-GlcpNAc-(1-4)-Asn
[][ASN]{[(4+1)][B-D-GLCPNAC]{}}
<?xml version="1.0" encoding="UTF-8"?>
<sugar version="1.0">
<residues>
<basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="2" name="n-acetyl" />
</residues>
<linkages>
<connection id="1" parent="1" child="2">
<linkage id="1" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
</linkages>
<aglyca>
<historicalData>
<entry id="0" name="ASN" toResidue="1">
<linkage parentType="n" childType="x">
<parent pos="4" />
<child pos="1" />
</linkage>
</entry>
</historicalData>
</aglyca>
</sugar>

1 - 5 of 48 entries with matching glycan part

b-D-GlcpNAc-(1-3)-Ser
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Taxons: 4 |

b-D-GlcpNAc-(1-3)+
|
Ser-(1-2)-Ala
|
Gly-(1-2)+
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Taxons |

b-D-GlcpNAc-(1-4)+
|
Asn-(1-2)-Gly-(1-2)-Ser-(1-2)-Met-(1-2)-Ser-(1-2)-Gly
|
Thr-(1-2)-His-(1-2)-Ala-(1-2)-Ser-(1-2)+
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Taxons |

b-D-GlcpNAc-(1-4)+
|
Asn-(1-2)-Lys-(1-2)-Thr-(1-2)-Leu-(1-2)-Met
|
Gly-(1-2)-Lys-(1-2)-Ala-(1-2)-Tyr-(1-2)-Thr-(1-2)-Ile-(1-2)-Phe-(1-2)+
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Taxons |

b-D-GlcpNAc-(1-1)-<linker-TMR>
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Taxons |
- N-GlcNAc
- ENGase product
Chemical Formula: | C12H21N3O7 | #C | #H | #O | #N | |
Molec. Weight: | 319 | 12 | 21 | 7 | 3 | |
# Atoms: | 43 | |||||
# Residues: | 2 | |||||
# Heavy Atoms: | 22 |
Superclasses:
|
Residues:
|
MHz | 360 | ||||||
Temperature | 300 | ||||||
Solvent | D2O | ||||||
Residue | Linkage | Proton | PPM | JFrom | JTo | Hz | Note |
Asn | HA | 3.968 | a | b | 6.9 | ||
Asn | HB | 2.866 | a | b' | 4 | ||
Asn | HB' | 2.932 | b | b' | -17.8 | ||
b-D-GlcpNAc | 4 | H1 | 5.072 | 1 | 2 | 9.8 | |
b-D-GlcpNAc | 4 | H2 | 3.821 | 2 | 3 | 10.6 | |
b-D-GlcpNAc | 4 | H3 | 3.601 | 3 | 4 | 9.1 | |
b-D-GlcpNAc | 4 | H4 | 3.472 | 4 | 5 | 10.4 | |
b-D-GlcpNAc | 4 | H5 | 3.527 | 5 | 6 | 2.4 | |
b-D-GlcpNAc | 4 | H6 | 3.876 | 5 | 6' | 5.55 | |
b-D-GlcpNAc | 4 | H6' | 3.739 | 6 | 6' | -12.7 | |
b-D-GlcpNAc | 4 | NAC | 2.013 | 0 |
1 - 5 of 7226 PDB entries

PDB ID 7fd2:
Cryo-EM structure of an alphavirus, Getah virus
Description:
Source: Getah virus
Experimental method: ELECTRON MICROSCOPY
Release date: 2022-08-10
Entry features 4 distinct glycan structures [16 instances].

PDB ID 7t9m:
Human Thyrotropin receptor bound by CS-17 Inverse Agonist Fab/Org 274179-0 Antagonist
Description:
Source: MUS MUSCULUS, Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Release date: 2022-08-10
Entry features 2 distinct glycan structures [4 instances].

PDB ID 7wrq:
Structure of Human IGF1/IGFBP3/ALS Ternary Complex
Description:
Source: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Release date: 2022-08-10
Entry features 2 distinct glycan structures [5 instances].

PDB ID 7unb:
Crystal structure of malaria transmission-blocking antigen Pfs48/45-6C variant in complex with human antibodies RUPA-117 and RUPA-47
Description:
Source: Homo sapiens, Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18Å
Release date: 2022-08-10
Entry features 1 distinct glycan structures [1 instances].

PDB ID 7xve:
Human Nav1.7 mutant class-I
Description:
Source: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Release date: 2022-08-10
Entry features 2 distinct glycan structures [9 instances].
1 - 5 of 16 literature references

Reference #21726
Tjondro HC; Ugonotti J; Kawahara R; Chatterjee S; Loke I; Chen S; Soltermann F; Hinneburg H; Parker BL; Venkatakrishnan V; Dieckmann R; Grant OC; Bylund J; Rodger A; Woods RJ; Karlsson-Bengtsson A; Struwe WB; Thaysen-Andersen M
Hyper-truncated Asn355- and Asn391-glycans modulate the activity of neutrophil granule myeloperoxidase.
Published 2021 in J Biol Chem, 296: 100144
Reference contains 20 structures

Reference #21197
Hobbs JK; Pluvinage B; Boraston AB
Glycan-metabolizing enzymes in microbe-host interactions: the Streptococcus pneumoniae paradigm.
Published 2018 in FEBS Lett., 592: 3865-3897
Reference contains 47 structures

Reference #20772
Li C; Li T; Wang LX
Chemoenzymatic Defucosylation of Therapeutic Antibodies for Enhanced Effector Functions Using Bacterial α-Fucosidases.
Published 2018 in Methods Mol. Biol., 1827: 367-380
Reference contains 2 structures

Reference #19000
Zouridakis M; Giastas P; Zarkadas E; Chroni-Tzartou D; Bregestovski P; Tzartos SJ
Crystal structures of free and antagonist-bound states of human α9 nicotinic receptor extracellular domain.
Published 2014 in Nat. Struct. Mol. Biol., 21: 976-80
Reference contains 1 structure

Reference #20487
Meuris L; Santens F; Elson G; Festjens N; Boone M; Dos Santos A; Devos S; Rousseau F; Plets E; Houthuys E; Malinge P; Magistrelli G; Cons L; Chatel L; Devreese B; Callewaert N
GlycoDelete engineering of mammalian cells simplifies N-glycosylation of recombinant proteins.
Published 2014 in Nat. Biotechnol., 32: 485-9
Reference contains 3 structures
1 - 5 of 2417 literature references from PDB entries

Reference #22033
Li Y; Fan Q; Zhou B; Shen Y; Zhang Y; Cheng L; Qi F; Song S; Guo Y; Yan R; Ju B; Zhang Z
Structural and functional analysis of an inter-Spike bivalent neutralizing antibody against SARS-CoV-2 variants.
Published 2022 in iScience, 25: 104431

Reference #21942
Dahms SO; Schnapp G; Winter M; Büttner FH; Schlepütz M; Gnamm C; Pautsch A; Brandstetter H
Dichlorophenylpyridine-Based Molecules Inhibit Furin through an Induced-Fit Mechanism.
Published 2022 in ACS Chem Biol, 17: 816-821

Reference #22308
Ju B; Zheng Q; Guo H; Fan Q; Li T; Song S; Sun H; Shen S; Zhou X; Xue W; Cui L; Zhou B; Li S; Xia N; Zhang Z
Immune escape by SARS-CoV-2 Omicron variant and structural basis of its effective neutralization by a broad neutralizing human antibody VacW-209.
Published 2022 in Cell Res, 32: 491-494

Reference #22038
Chu KY; Malik A; Thamilselvan V; Martinez-Hackert E
Type II BMP and Activin receptors BMPR2 and ACVR2A share a conserved mode of growth factor recognition.
Published 2022 in J Biol Chem, : 102076

Reference #21950
Dieudonné T; Herrera SA; Laursen MJ; Lejeune M; Stock C; Slimani K; Jaxel C; Lyons JA; Montigny C; Pomorski TG; Nissen P; Lenoir G
Autoinhibition and regulation by phosphoinositides of ATP8B1, a human lipid flippase associated with intrahepatic cholestatic disorders.
Published 2022 in Elife, 11:
NCBI Taxonomy ID | Scientific Name |
9606 | Homo sapiens |
12721 | Human immunodeficiency virus |
11309 | unidentified influenza virus |
Consortium for Functional Glycomics (CFG):
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