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Glycosciences.DB structure entry #22729:

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Format: CarbBank LINUCS GlycoCT_condensed GlycoCT_xml


a-L-Fucp


RES
1b:a-lgal-HEX-1:5|6:d


<?xml version="1.0" encoding="UTF-8"?>
 <sugar version="1.0">
 <residues>
 <basetype id="1" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-lgal-HEX-1:5|6:d">
 <stemtype id="1" type="lgal" />
 <modification type="d" pos_one="6" />
 </basetype>
 </residues>
 <linkages />
 </sugar>

SNFG-style Graphics

3D Structure Model

download coordinates

Superclasses:

Residues:

Residue	Count
A-L-FUCP	1

NMR Proton Chemical Shift Info

MHz	0
Temperature	70
Solvent	D2O
Residue	Linkage	Proton	PPM	JFrom	JTo	Hz	Note
Monosaccharid		H1	5.200				note
Monosaccharid		H2	3.770				note
Monosaccharid		H3	3.860				note
Monosaccharid		H4	3.810				note
Monosaccharid		H5	4.200				note
Monosaccharid		H6	1.210				note

NMR Carbon Chemical Shift Info

MHz	0
Temperature	70
Solvent	D2O
Residue	Linkage	Carbon	PPM	JFrom	JTo	Hz	Note
Monosaccharid		C1	93.12				note
Monosaccharid		C2	69.09				note
Monosaccharid		C3	70.30				note
Monosaccharid		C4	72.80				note
Monosaccharid		C5	67.10				note
Monosaccharid		C6	16.33				note

PDB references: 45

1 - 5 of 45 PDB entries

PDB ID 7bbc: Joint X-ray/neutron room temperature structure of perdeuterated PLL lectin in complex with perdeuterated L-fucose

Description: PLL lectin

Source: Photorhabdus laumondii

Experimental method: X-RAY DIFFRACTION

Resolution: 1.84Å

Release date: 2021-03-24

Entry features 2 distinct glycan structures [3 instances].

PDB ID 7b7f: Room temperature X-ray structure of H/D-exchanged PLL lectin in complex with L-fucose

Description: PLL lectin

Source: Photorhabdus laumondii

Experimental method: X-RAY DIFFRACTION

Resolution: 1.6Å

Release date: 2021-03-17

Entry features 2 distinct glycan structures [4 instances].

PDB ID 7bb4: Crystal structure of perdeuterated PLL lectin in complex with L-fucose

Description: PLL lectin

Source: Photorhabdus laumondii

Experimental method: X-RAY DIFFRACTION

Resolution: 1.7Å

Release date: 2021-03-17

Entry features 2 distinct glycan structures [4 instances].

PDB ID 6kpm: Crystal Structure of endo-beta-N-acetylglucosaminidase from Cordyceps militaris in complex with L-fucose

Description: Chitinase

Source: Cordyceps militaris CM01

Experimental method: X-RAY DIFFRACTION

Resolution: 1.8Å

Release date: 2019-10-02

Entry features 1 distinct glycan structures [1 instances].

PDB ID 6hmy: Cholera toxin classical B-pentamer in complex with fucosyl-GM1

Description: Cholera enterotoxin B-subunit

Source: Vibrio cholerae

Experimental method: X-RAY DIFFRACTION

Resolution: 1.6Å

Release date: 2019-08-14

Entry features 3 distinct glycan structures [12 instances].

Literature references: 4

1 - 4 of 4 literature references

Reference #21807

Bojar D; Meche L; Meng G; Eng W; Smith DF; Cummings RD; Mahal LK

A Useful Guide to Lectin Binding: Machine-Learning Directed Annotation of 57 Unique Lectin Specificities.

Published 2022 in ACS Chem Biol, : epub ahead of print

Reference contains 73 structures

Reference #21602

Hyun JY; Kim S; Lee CH; Lee HS; Shin I

Efficient Preparation and Bioactivity Evaluation of Glycan-Defined Glycoproteins.

Published 2021 in ACS Chem Biol, 16: 1930-1940

Reference contains 9 structures

Reference #21300

Seki H; Huang Y; Arakawa T; Yamada C; Kinoshita T; Iwamoto S; Higuchi Y; Takegawa K; Fushinobu S

Structural basis for the specific cleavage of core-fucosylated -glycans by endo-β--acetylglucosaminidase from the fungus Cordyceps militaris.

Published 2019 in J. Biol. Chem., 294: 17143-17154

Reference contains 3 structures

Reference #21197

Hobbs JK; Pluvinage B; Boraston AB

Glycan-metabolizing enzymes in microbe-host interactions: the Streptococcus pneumoniae paradigm.

Published 2018 in FEBS Lett., 592: 3865-3897

Reference contains 47 structures

Further literature references from PDB entries: 23

1 - 5 of 23 literature references from PDB entries

Reference #20879

Yamasaki K; Kubota T; Yamasaki T; Nagashima I; Shimizu H; Terada RI; Nishigami H; Kang J; Tateno M; Tateno H

Structural basis for specific recognition of core fucosylation in N-glycans by Pholiota squarrosa lectin (PhoSL).

Published 2019 in Glycobiology, 29: 576-587

Reference contains 6 structures

Reference #21257

Huang Y; Higuchi Y; Kinoshita T; Mitani A; Eshima Y; Takegawa K

Characterization of novel endo-β-N-acetylglucosaminidases from Sphingobacterium species, Beauveria bassiana and Cordyceps militaris that specifically hydrolyze fucose-containing oligosaccharides and human IgG.

Published 2018 in Sci Rep, 8: 246

Reference #19530

Heggelund JE; Burschowsky D; Bjørnestad VA; Hodnik V; Anderluh G; Krengel U

High-Resolution Crystal Structures Elucidate the Molecular Basis of Cholera Blood Group Dependence.

Published 2016 in PLoS Pathog., 12: e1005567

Reference #15480

Topin J; Lelimousin M; Arnaud J; Audfray A; Pérez S; Varrot A; Imberty A

The Hidden Conformation of Lewis x, a Human Histo-Blood Group Antigen, Is a Determinant for Recognition by Pathogen Lectins.

Published 2016 in ACS Chem. Biol., 11: 2011-20

Reference contains 2 structures

Reference #19144

Houser J; Komarek J; Cioci G; Varrot A; Imberty A; Wimmerova M

Structural insights into Aspergillus fumigatus lectin specificity: AFL binding sites are functionally non-equivalent.

Published 2015 in Acta Crystallogr. D Biol. Crystallogr., 71: 442-53

Consortium for Functional Glycomics (CFG):

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