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Glycosciences.DB structure entry #22729:
a-L-Fucp
[][A-L-FUCP]{}
RES
1b:a-lgal-HEX-1:5|6:d
<?xml version="1.0" encoding="UTF-8"?>
<sugar version="1.0">
<residues>
<basetype id="1" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-lgal-HEX-1:5|6:d">
<stemtype id="1" type="lgal" />
<modification type="d" pos_one="6" />
</basetype>
</residues>
<linkages />
</sugar>

Superclasses: |
Residues:
|
MHz | 0 | ||||||
Temperature | 70 | ||||||
Solvent | D2O | ||||||
Residue | Linkage | Proton | PPM | JFrom | JTo | Hz | Note |
Monosaccharid | H1 | 5.200 | note | ||||
Monosaccharid | H2 | 3.770 | note | ||||
Monosaccharid | H3 | 3.860 | note | ||||
Monosaccharid | H4 | 3.810 | note | ||||
Monosaccharid | H5 | 4.200 | note | ||||
Monosaccharid | H6 | 1.210 | note |
MHz | 0 | ||||||
Temperature | 70 | ||||||
Solvent | D2O | ||||||
Residue | Linkage | Carbon | PPM | JFrom | JTo | Hz | Note |
Monosaccharid | C1 | 93.12 | note | ||||
Monosaccharid | C2 | 69.09 | note | ||||
Monosaccharid | C3 | 70.30 | note | ||||
Monosaccharid | C4 | 72.80 | note | ||||
Monosaccharid | C5 | 67.10 | note | ||||
Monosaccharid | C6 | 16.33 | note |
1 - 5 of 45 PDB entries

PDB ID 7bbc:
Joint X-ray/neutron room temperature structure of perdeuterated PLL lectin in complex with perdeuterated L-fucose
Description: PLL lectin
Source: Photorhabdus laumondii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84Å
Release date: 2021-03-24
Entry features 2 distinct glycan structures [3 instances].

PDB ID 7b7f:
Room temperature X-ray structure of H/D-exchanged PLL lectin in complex with L-fucose
Description: PLL lectin
Source: Photorhabdus laumondii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6Å
Release date: 2021-03-17
Entry features 2 distinct glycan structures [4 instances].

PDB ID 7bb4:
Crystal structure of perdeuterated PLL lectin in complex with L-fucose
Description: PLL lectin
Source: Photorhabdus laumondii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7Å
Release date: 2021-03-17
Entry features 2 distinct glycan structures [4 instances].

PDB ID 6kpm:
Crystal Structure of endo-beta-N-acetylglucosaminidase from Cordyceps militaris in complex with L-fucose
Description: Chitinase
Source: Cordyceps militaris CM01
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8Å
Release date: 2019-10-02
Entry features 1 distinct glycan structures [1 instances].

PDB ID 6hmy:
Cholera toxin classical B-pentamer in complex with fucosyl-GM1
Description: Cholera enterotoxin B-subunit
Source: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6Å
Release date: 2019-08-14
Entry features 3 distinct glycan structures [12 instances].
1 - 4 of 4 literature references

Reference #21807
Bojar D; Meche L; Meng G; Eng W; Smith DF; Cummings RD; Mahal LK
A Useful Guide to Lectin Binding: Machine-Learning Directed Annotation of 57 Unique Lectin Specificities.
Published 2022 in ACS Chem Biol, : epub ahead of print
Reference contains 73 structures

Reference #21602
Hyun JY; Kim S; Lee CH; Lee HS; Shin I
Efficient Preparation and Bioactivity Evaluation of Glycan-Defined Glycoproteins.
Published 2021 in ACS Chem Biol, 16: 1930-1940
Reference contains 9 structures

Reference #21300
Seki H; Huang Y; Arakawa T; Yamada C; Kinoshita T; Iwamoto S; Higuchi Y; Takegawa K; Fushinobu S
Structural basis for the specific cleavage of core-fucosylated -glycans by endo-β--acetylglucosaminidase from the fungus Cordyceps militaris.
Published 2019 in J. Biol. Chem., 294: 17143-17154
Reference contains 3 structures

Reference #21197
Hobbs JK; Pluvinage B; Boraston AB
Glycan-metabolizing enzymes in microbe-host interactions: the Streptococcus pneumoniae paradigm.
Published 2018 in FEBS Lett., 592: 3865-3897
Reference contains 47 structures
1 - 5 of 23 literature references from PDB entries

Reference #20879
Yamasaki K; Kubota T; Yamasaki T; Nagashima I; Shimizu H; Terada RI; Nishigami H; Kang J; Tateno M; Tateno H
Structural basis for specific recognition of core fucosylation in N-glycans by Pholiota squarrosa lectin (PhoSL).
Published 2019 in Glycobiology, 29: 576-587
Reference contains 6 structures

Reference #21257
Huang Y; Higuchi Y; Kinoshita T; Mitani A; Eshima Y; Takegawa K
Characterization of novel endo-β-N-acetylglucosaminidases from Sphingobacterium species, Beauveria bassiana and Cordyceps militaris that specifically hydrolyze fucose-containing oligosaccharides and human IgG.
Published 2018 in Sci Rep, 8: 246

Reference #19530
Heggelund JE; Burschowsky D; Bjørnestad VA; Hodnik V; Anderluh G; Krengel U
High-Resolution Crystal Structures Elucidate the Molecular Basis of Cholera Blood Group Dependence.
Published 2016 in PLoS Pathog., 12: e1005567

Reference #15480
Topin J; Lelimousin M; Arnaud J; Audfray A; Pérez S; Varrot A; Imberty A
The Hidden Conformation of Lewis x, a Human Histo-Blood Group Antigen, Is a Determinant for Recognition by Pathogen Lectins.
Published 2016 in ACS Chem. Biol., 11: 2011-20
Reference contains 2 structures

Reference #19144
Houser J; Komarek J; Cioci G; Varrot A; Imberty A; Wimmerova M
Structural insights into Aspergillus fumigatus lectin specificity: AFL binding sites are functionally non-equivalent.
Published 2015 in Acta Crystallogr. D Biol. Crystallogr., 71: 442-53
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