Glycosciences.de - Glycosciences.DB entry 22728

☰
- Add title
- Add keywords
- Add publication
- Leave comment

Glycosciences.DB structure entry #22728:

■ Expand all ■ Collapse all

Format: CarbBank LINUCS GlycoCT_condensed GlycoCT_xml


b-L-Fucp


RES
1b:b-lgal-HEX-1:5|6:d


<?xml version="1.0" encoding="UTF-8"?>
 <sugar version="1.0">
 <residues>
 <basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-lgal-HEX-1:5|6:d">
 <stemtype id="1" type="lgal" />
 <modification type="d" pos_one="6" />
 </basetype>
 </residues>
 <linkages />
 </sugar>

SNFG-style Graphics

3D Structure Model

download coordinates

Superclasses:

Residues:

Residue	Count
B-L-FUCP	1

NMR Proton Chemical Shift Info

MHz	0
Temperature	70
Solvent	D2O
Residue	Linkage	Proton	PPM	JFrom	JTo	Hz	Note
Monosaccharid		H1	4.550				note
Monosaccharid		H2	3.460				note
Monosaccharid		H3	3.630				note
Monosaccharid		H4	3.740				note
Monosaccharid		H5	3.790				note
Monosaccharid		H6	1.260				note

NMR Carbon Chemical Shift Info

MHz	0
Temperature	70
Solvent	D2O
Residue	Linkage	Carbon	PPM	JFrom	JTo	Hz	Note
Monosaccharid		C1	97.15				note
Monosaccharid		C2	72.73				note
Monosaccharid		C3	73.93				note
Monosaccharid		C4	72.35				note
Monosaccharid		C5	71.64				note
Monosaccharid		C6	16.33				note

PDB references: 34

1 - 5 of 34 PDB entries

PDB ID 7mzq: Crystal structure of the UcaD lectin-binding domain in complex with fucose

Description:

Source: Proteus mirabilis

Experimental method: X-RAY DIFFRACTION

Resolution: 1.5Å

Release date: 2022-07-06

Entry features 1 distinct glycan structures [1 instances].

PDB ID 6x7j: fucose-bound structure of Marinomonas primoryensis PA14 carbohydrate-binding domain

Description: Antifreeze protein

Source: Marinomonas primoryensis

Experimental method: X-RAY DIFFRACTION

Resolution: 0.97Å

Release date: 2021-06-02

Entry features 1 distinct glycan structures [1 instances].

PDB ID 7bbc: Joint X-ray/neutron room temperature structure of perdeuterated PLL lectin in complex with perdeuterated L-fucose

Description: PLL lectin

Source: Photorhabdus laumondii

Experimental method: X-RAY DIFFRACTION

Resolution: 1.84Å

Release date: 2021-03-24

Entry features 2 distinct glycan structures [3 instances].

PDB ID 7b7c: Room temperature X-ray structure of perdeuterated PLL lectin in complex with L-fucose

Description: PLL lectin

Source: Photorhabdus laumondii

Experimental method: X-RAY DIFFRACTION

Resolution: 1.55Å

Release date: 2021-03-17

Entry features 1 distinct glycan structures [4 instances].

PDB ID 7b7f: Room temperature X-ray structure of H/D-exchanged PLL lectin in complex with L-fucose

Description: PLL lectin

Source: Photorhabdus laumondii

Experimental method: X-RAY DIFFRACTION

Resolution: 1.6Å

Release date: 2021-03-17

Entry features 2 distinct glycan structures [4 instances].

Literature references: 2

1 - 2 of 2 literature references

Reference #20499

Mucha E; Lettow M; Marianski M; Thomas DA; Struwe WB; Harvey DJ; Meijer G; Seeberger PH; von Helden G; Pagel K

Fucose Migration in Intact Protonated Glycan Ions: A Universal Phenomenon in Mass Spectrometry.

Published 2018 in Angew. Chem. Int. Ed. Engl., :

Reference contains 6 structures

Reference #21197

Hobbs JK; Pluvinage B; Boraston AB

Glycan-metabolizing enzymes in microbe-host interactions: the Streptococcus pneumoniae paradigm.

Published 2018 in FEBS Lett., 592: 3865-3897

Reference contains 47 structures

Further literature references from PDB entries: 19

1 - 5 of 19 literature references from PDB entries

Reference #21465

Guo S; Vance TDR; Zahiri H; Eves R; Stevens C; Hehemann JH; Vidal-Melgosa S; Davies PL

Structural Basis of Ligand Selectivity by a Bacterial Adhesin Lectin Involved in Multispecies Biofilm Formation.

Published 2021 in mBio, 12:

Reference #22285

Liu M; Cheng X; Wang J; Tian D; Tang K; Xu T; Zhang M; Wang Y; Wang M

Structural insights into the fungi-nematodes interaction mediated by fucose-specific lectin AofleA from Arthrobotrys oligospora.

Published 2020 in Int J Biol Macromol, 164: 783-793

Reference #22119

Itoh A; Nonaka Y; Nakakita SI; Yoshida H; Nishi N; Nakamura T; Kamitori S

Structures of human galectin-10/monosaccharide complexes demonstrate potential of monosaccharides as effectors in forming Charcot-Leyden crystals.

Published 2020 in Biochem Biophys Res Commun, :

Reference #21335

Wu H; Rebello O; Crost EH; Owen CD; Walpole S; Bennati-Granier C; Ndeh D; Monaco S; Hicks T; Colvile A; Urbanowicz PA; Walsh MA; Angulo J; Spencer DIR; Juge N

Fucosidases from the human gut symbiont Ruminococcus gnavus.

Published 2020 in Cell. Mol. Life Sci., :

Reference contains 9 structures

Reference #22151

Klontz EH; Li C; Kihn K; Fields JK; Beckett D; Snyder GA; Wintrode PL; Deredge D; Wang LX; Sundberg EJ

Structure and dynamics of an α-fucosidase reveal a mechanism for highly efficient IgG transfucosylation.

Published 2020 in Nat Commun, 11: 6204

■ Expand all ■ Collapse all

© 2010-2016,2022 Justus-Liebig University Giessen, Institute of Veterinary Physiology and Biochemistry, Frankfurter Str. 100, 35392 Giessen, Germany
© 2017-2021 The Glycosciences.de crew
© 1997-2009 German Cancer Research Center Heidelberg, Central Spectroscopic Division, Im Neuenheimer Feld 280, 69120 Heidelberg, Germany
All rights reserved.