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Glycosciences.DB structure entry #22589:
a-D-Manp-(1-6)+
|
b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)+
| |
a-D-Manp-(1-3)+ b-D-GlcpNAc-(1-4)-ASN
|
a-L-Fucp-(1-3)+
[][ASN]{[(4+1)][B-D-GLCPNAC]{[(3+1)][A-L-FUCP]{}[(4+1)][B-D-GLCPNAC]{[(4+1)][B-D-MANP]{[(3+1)][A-D-MANP]{}[(6+1)][A-D-MANP]{}}}}}
<?xml version="1.0" encoding="UTF-8"?>
<sugar version="1.0">
<residues>
<basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="2" name="n-acetyl" />
<basetype id="3" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-lgal-HEX-1:5|6:d">
<stemtype id="1" type="lgal" />
<modification type="d" pos_one="6" />
</basetype>
<basetype id="4" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="5" name="n-acetyl" />
<basetype id="6" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dman-HEX-1:5">
<stemtype id="1" type="dman" />
</basetype>
<basetype id="7" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dman-HEX-1:5">
<stemtype id="1" type="dman" />
</basetype>
<basetype id="8" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dman-HEX-1:5">
<stemtype id="1" type="dman" />
</basetype>
</residues>
<linkages>
<connection id="1" parent="1" child="2">
<linkage id="1" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="2" parent="1" child="3">
<linkage id="2" parentType="o" childType="d">
<parent pos="3" />
<child pos="1" />
</linkage>
</connection>
<connection id="3" parent="1" child="4">
<linkage id="3" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
<connection id="4" parent="4" child="5">
<linkage id="4" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="5" parent="4" child="6">
<linkage id="5" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
<connection id="6" parent="6" child="7">
<linkage id="6" parentType="o" childType="d">
<parent pos="3" />
<child pos="1" />
</linkage>
</connection>
<connection id="7" parent="6" child="8">
<linkage id="7" parentType="o" childType="d">
<parent pos="6" />
<child pos="1" />
</linkage>
</connection>
</linkages>
<aglyca>
<historicalData>
<entry id="0" name="ASN" toResidue="1">
<linkage parentType="n" childType="x">
<parent pos="4" />
<child pos="1" />
</linkage>
</entry>
</historicalData>
</aglyca>
</sugar>
3D Structure Model1 - 2 of 2 entries with matching glycan part
Structure entry #23439:
a-D-Manp-(1-6)+
|
b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)+
| |
a-D-Manp-(1-3)+ b-D-GlcpNAc
|
a-L-Fucp-(1-3)+
 |
 |
 |
 : 3 |
 |
Taxons |
Structure entry #29471:
a-D-Manp-(1-6)+
|
b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)+
| |
a-D-Manp-(1-3)+ b-D-GlcpNAc-(1-4)-Asn
|
a-L-Fucp-(1-3/6)+
|
|
|
: 1 |
|
Taxons |
- N-glycan core (Show) (Search Database)
Superclasses:
|
Residues:
|
||||||||||||||||||||
PDB references: 31 - 3 of 3 PDB entries
PDB ID 6of5:
The crystal structure of dodecyloxy(naphthalen-1-yl)methylphosphonic acid in complex with red kidney bean purple acid phosphatase
Description: Fe(3+)-Zn(2+) purple acid phosphatase (E.C.3.1.3.2)
Source: Phaseolus vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3Å
Release date: 2019-09-04
Entry features 5 distinct glycan structures [17 instances].
PDB ID 6ofd:
The crystal structure of octadecyloxy(naphthalen-1-yl)methylphosphonic acid in complex with red kidney bean purple acid phosphatase
Description: Fe(3+)-Zn(2+) purple acid phosphatase (E.C.3.1.3.2)
Source: Phaseolus vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2Å
Release date: 2019-09-04
Entry features 6 distinct glycan structures [17 instances].
PDB ID 1b5f:
NATIVE CARDOSIN A FROM CYNARA CARDUNCULUS L.
Description: PROTEIN (CARDOSIN A) (3.4.23.-)
Source: Cynara cardunculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72Å
Release date: 1999-01-13
Entry features 4 distinct glycan structures [4 instances].
Literature references: 21 - 2 of 2 literature references
Reference #21026
Paschinger K; Yan S; Wilson IBH
N-glycomic Complexity in Anatomical Simplicity: Caenorhabditis elegans as a Non-model Nematode?
Published 2019 in Front Mol Biosci, 6: 9
Reference contains 28 structures
Reference #20530
Yoo JY; Ko KS; Seo HK; Park S; Fanata WI; Harmoko R; Ramasamy NK; Thulasinathan T; Mengiste T; Lim JM; Lee SY; Lee KO
Limited Addition of the 6-Arm β1,2-linked N-Acetylglucosamine (GlcNAc) Residue Facilitates the Formation of the Largest N-Glycan in Plants.
Published 2015 in J. Biol. Chem., 290: 16560-72
Reference contains 6 structures
1 - 2 of 2 literature references from PDB entries
Reference #21232
Feder D; Kan MW; Hussein WM; Guddat LW; Schenk G; McGeary RP
Synthesis, evaluation and structural investigations of potent purple acid phosphatase inhibitors as drug leads for osteoporosis.
Published 2019 in Eur J Med Chem, 182: 111611
Reference #15743
Frazão C; Bento I; Costa J; Soares CM; Veríssimo P; Faro C; Pires E; Cooper J; Carrondo MA
Crystal structure of cardosin A, a glycosylated and Arg-Gly-Asp-containing aspartic proteinase from the flowers of Cynara cardunculus L.
Published 1999 in J. Biol. Chem., 274: 27694-701
| NCBI Taxonomy ID | Scientific Name |
| 6239 | Caenorhabditis elegans |
Consortium for Functional Glycomics (CFG):
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