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Glycosciences.DB structure entry #22588:
b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)+
|
b-D-GlcpNAc-(1-4)-ASN
|
a-L-Fucp-(1-3)+
[][ASN]{[(4+1)][B-D-GLCPNAC]{[(3+1)][A-L-FUCP]{}[(4+1)][B-D-GLCPNAC]{[(4+1)][B-D-MANP]{}}}}
<?xml version="1.0" encoding="UTF-8"?>
<sugar version="1.0">
<residues>
<basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="2" name="n-acetyl" />
<basetype id="3" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-lgal-HEX-1:5|6:d">
<stemtype id="1" type="lgal" />
<modification type="d" pos_one="6" />
</basetype>
<basetype id="4" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="5" name="n-acetyl" />
<basetype id="6" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dman-HEX-1:5">
<stemtype id="1" type="dman" />
</basetype>
</residues>
<linkages>
<connection id="1" parent="1" child="2">
<linkage id="1" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="2" parent="1" child="3">
<linkage id="2" parentType="o" childType="d">
<parent pos="3" />
<child pos="1" />
</linkage>
</connection>
<connection id="3" parent="1" child="4">
<linkage id="3" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
<connection id="4" parent="4" child="5">
<linkage id="4" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="5" parent="4" child="6">
<linkage id="5" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
</linkages>
<aglyca>
<historicalData>
<entry id="0" name="ASN" toResidue="1">
<linkage parentType="n" childType="x">
<parent pos="4" />
<child pos="1" />
</linkage>
</entry>
</historicalData>
</aglyca>
</sugar>
3D Structure Model1 - 1 of 1 entries with matching glycan part
Structure entry #23434:
b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)+
|
b-D-GlcpNAc
|
a-L-Fucp-(1-3)+
 |
 |
 |
 no Ref |
 |
Taxons |
Superclasses:
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Residues:
|
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PDB references: 421 - 5 of 42 PDB entries
PDB ID 8cyb:
SARS-CoV-2 Spike protein in complex with a pan-sarbecovirus nanobody 1-8
Description:
Source: Severe acute respiratory syndrome coronavirus 2, Lama glama
Experimental method: ELECTRON MICROSCOPY
Release date: 2022-07-06
Entry features 8 distinct glycan structures [54 instances].
PDB ID 7kbk:
Ricin bound to VHH antibody V6E11
Description:
Source: Ricinus communis, Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.091Å
Release date: 2021-08-04
Entry features 2 distinct glycan structures [3 instances].
PDB ID 7auw:
Inhibitory complex of human meprin beta with mouse fetuin-B.
Description: Meprin beta (E.C.3.4.24.63), Fetuin-B
Source: Homo sapiens, Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8Å
Release date: 2021-04-14
Entry features 9 distinct glycan structures [18 instances].
PDB ID 6orm:
Crystal Structure of Peruvianin-I (Cysteine peptidase from Thevetia peruviana latex)
Description: Peruvianin-I (E.C.3.4.22.2)
Source: Thevetia peruviana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15Å
Release date: 2020-05-06
Entry features 3 distinct glycan structures [6 instances].
PDB ID 6of5:
The crystal structure of dodecyloxy(naphthalen-1-yl)methylphosphonic acid in complex with red kidney bean purple acid phosphatase
Description: Fe(3+)-Zn(2+) purple acid phosphatase (E.C.3.1.3.2)
Source: Phaseolus vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3Å
Release date: 2019-09-04
Entry features 5 distinct glycan structures [17 instances].
Literature references from PDB entries: 271 - 5 of 27 literature references from PDB entries
Reference #22054
Xiang Y; Huang W; Liu H; Sang Z; Nambulli S; Tubiana J; Williams KL; Duprex WP; Schneidman-Duhovny D; Wilson IA; Taylor DJ; Shi Y
Superimmunity by pan-sarbecovirus nanobodies.
Published 2022 in Cell Rep, 39: 111004
Reference #21534
Rudolph MJ; Poon AY; Kavaliauskiene S; Myrann AG; Reynolds-Peterson C; Davis SA; Sandvig K; Vance DJ; Mantis NJ
Structural Analysis of Toxin-Neutralizing, Single-Domain Antibodies that Bridge Ricin's A-B Subunit Interface.
Published 2021 in J Mol Biol, 433: 167086
Reference #22161
Cruz WT; Bezerra EHS; Ramos MV; Rocha BAM; Medina MC; Demarco D; Carvalho CPS; Oliveira JS; Sousa JS; Souza PFN; Freire VN; da Silva FMS; Freitas CDT
Crystal structure and specific location of a germin-like protein with proteolytic activity from Thevetia peruviana.
Published 2020 in Plant Sci, 298: 110590
Reference #20954
Yadav SK; Archana ; Singh R; Singh PK; Vasudev PG
Insecticidal fern protein Tma12 is possibly a lytic polysaccharide monooxygenase.
Published 2019 in Planta, :
Reference #21232
Feder D; Kan MW; Hussein WM; Guddat LW; Schenk G; McGeary RP
Synthesis, evaluation and structural investigations of potent purple acid phosphatase inhibitors as drug leads for osteoporosis.
Published 2019 in Eur J Med Chem, 182: 111611
Consortium for Functional Glycomics (CFG):
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