Glycosciences.de - Glycosciences.DB entry 22574

☰
- Add title
- Add keywords
- Add publication
- Leave comment

Glycosciences.DB structure entry #22574: Lactose (beta-anomeric form)

■ Expand all ■ Collapse all

Format: CarbBank LINUCS GlycoCT_condensed GlycoCT_xml


b-D-Galp-(1-4)-b-D-Glcp


RES
1b:b-dglc-HEX-1:5
2b:b-dgal-HEX-1:5
LIN
1:1o(4+1)2d


<?xml version="1.0" encoding="UTF-8"?>
 <sugar version="1.0">
 <residues>
 <basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
 <stemtype id="1" type="dglc" />
 </basetype>
 <basetype id="2" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
 <stemtype id="1" type="dgal" />
 </basetype>
 </residues>
 <linkages>
 <connection id="1" parent="1" child="2">
 <linkage id="1" parentType="o" childType="d">
 <parent pos="4" />
 <child pos="1" />
 </linkage>
 </connection>
 </linkages>
 </sugar>

SNFG-style Graphics

3D Structure Model

download coordinates

Corresponding entries: 55

1 - 5 of 55 entries with matching glycan part

Structure entry #134: Lactosylceramide / LacCer

b-D-Galp-(1-4)-b-D-Glcp-(1-1)-Ceramide

no 3d model

no NMR spectra

literature references

no GlycoMaps

Structure entry #325:

b-D-Galp-(1-4)-b-D-Glcp-(1-1)-Methyl

no 3d model

NMR spectra

literature references

no GlycoMaps

Taxons

Structure entry #1753:

b-D-Galp-(1-4)-b-D-Glcp-(1-1)-2-propenamide

no NMR spectra

literature references

no GlycoMaps

Taxons

Structure entry #2240:

b-D-Galp-(1-4)-b-D-Glcp-(1-5)-Gln-(1-2)-Tyr-(1-2)-Gly-(1-2)-Gly-(1-2)-Phe-(1-2)-Leu

no 3d model

no NMR spectra

literature references

no GlycoMaps

Taxons

Structure entry #3456:

b-D-Galp-(1-4)-b-D-Glcp-(1-1)-2R-amino-Octadec-4E-en-1,3S-diol

no NMR spectra

literature references

no GlycoMaps

Taxons

Lactose
Lac

Superclasses:

Hex
Hex	2

Residues:

Residue	Count
B-D-GALP	1
B-D-GLCP	1

PDB references: 121

1 - 5 of 121 PDB entries

PDB ID 7nyt: Trichoderma reesei Cel7A E212Q mutant in complex with lactose

Description:

Source: Hypocrea jecorina

Experimental method: X-RAY DIFFRACTION

Resolution: 1.09Å

Release date: 2022-03-09

Entry features 3 distinct glycan structures [3 instances].

PDB ID 7cya: Saimiri boliviensis boliviensis galectin-13 with lactose

Description: Galectin

Source: Saimiri boliviensis boliviensis

Experimental method: X-RAY DIFFRACTION

Resolution: 1.71Å

Release date: 2021-06-16

Entry features 1 distinct glycan structures [1 instances].

PDB ID 6m5y: Structure of human galectin-1 tandem-repeat mutant with lactose

Description: Galectin-1,Galectin-1

Source: Homo sapiens

Experimental method: X-RAY DIFFRACTION

Resolution: 1.38Å

Release date: 2021-03-17

Entry features 2 distinct glycan structures [2 instances].

PDB ID 6ljq: human galectin-16 R55N

Description: Galectin-16

Source: Homo sapiens

Experimental method: X-RAY DIFFRACTION

Resolution: 1.49Å

Release date: 2020-10-14

Entry features 1 distinct glycan structures [1 instances].

PDB ID 6ljr: human galectin-16 R55N/H57R

Description: Galectin-16

Source: Homo sapiens

Experimental method: X-RAY DIFFRACTION

Resolution: 2Å

Release date: 2020-10-14

Entry features 1 distinct glycan structures [1 instances].

Conformational maps: 1

Map ID: 7831

Disaccharide Fragment: b-D-Galp-(1-4)-b-D-Glcp

Linkage Path: 4

Method: MD MM3(1996) Tinker 4 HTMD, 1000K, 10ns

Literature references: 10

1 - 5 of 10 literature references

Reference #21645

Li C; Palma AS; Zhang P; Zhang Y; Gao C; Silva LM; Li Z; Trovão F; Weishaupt M; Seeberger PH; Likhosherstov LM; Piskarev V; Yu J; Westerlind U; Chai W

Noncovalent microarrays from synthetic amino-terminating glycans: Implications in expanding glycan microarray diversity and platform comparison.

Published 2021 in Glycobiology, 31: 931-946

Reference contains 41 structures

Reference #21478

Li X; Yao Y; Liu T; Gu K; Han Q; Zhang W; Ayala GJ; Liu Y; Na H; Yu J; Zhang F; Mayo KH; Su J

Actin binding to galectin-13/placental protein-13 occurs independently of the galectin canonical ligand-binding site.

Published 2021 in Glycobiology, 31: 1219-1229

Reference contains 1 structure

Reference #21602

Hyun JY; Kim S; Lee CH; Lee HS; Shin I

Efficient Preparation and Bioactivity Evaluation of Glycan-Defined Glycoproteins.

Published 2021 in ACS Chem Biol, 16: 1930-1940

Reference contains 9 structures

Reference #22000

Sojitra M; Sarkar S; Maghera J; Rodrigues E; Carpenter EJ; Seth S; Ferrer Vinals D; Bennett NJ; Reddy R; Khalil A; Xue X; Bell MR; Zheng RB; Zhang P; Nycholat C; Bailey JJ; Ling CC; Lowary TL; Paulson JC; Macauley MS; Derda R

Genetically encoded multivalent liquid glycan array displayed on M13 bacteriophage.

Published 2021 in Nat Chem Biol, 17: 806-816

Reference contains 65 structures

Reference #20656

Su J; Song C; Si Y; Cui L; Yang T; Li Y; Wang H; Tai G; Zhou Y

Identification of key amino acid residues determining ligand binding specificity, homodimerization and cellular distribution of human galectin-10.

Published 2019 in Glycobiology, 29: 85-93

Reference contains 2 structures

Further literature references from PDB entries: 68

1 - 5 of 68 literature references from PDB entries

Reference #22126

Si Y; Yao Y; Jaramillo Ayala G; Li X; Han Q; Zhang W; Xu X; Tai G; Mayo KH; Zhou Y; Su J

Human galectin-16 has a pseudo ligand binding site and plays a role in regulating c-Rel-mediated lymphocyte activity.

Published 2021 in Biochim Biophys Acta Gen Subj, 1865: 129755

Reference #22100

Si Y; Li Y; Yang T; Li X; Ayala GJ; Mayo KH; Tai G; Su J; Zhou Y

Structure-function studies of galectin-14, an important effector molecule in embryology.

Published 2021 in FEBS J, 288: 1041-1055

Reference #22239

Hoffmann D; Diderrich R; Reithofer V; Friederichs S; Kock M; Essen LO; Mösch HU

Functional reprogramming of epithelial adhesins: the role of conserved and variable structural motifs in ligand binding.

Published 2020 in J Biol Chem, 295: 12512-12524

Reference #22172

Mahasenan KV; Batuecas MT; De Benedetti S; Kim C; Rana N; Lee M; Hesek D; Fisher JF; Sanz-Aparicio J; Hermoso JA; Mobashery S

Catalytic Cycle of Glycoside Hydrolase BglX from and Its Implications for Biofilm Formation.

Published 2020 in ACS Chem Biol, 15: 189-196

Reference #22235

Shilova A; Lebrette H; Aurelius O; Nan J; Welin M; Kovacic R; Ghosh S; Safari C; Friel RJ; Milas M; Matej Z; Högbom M; Brändén G; Kloos M; Shoeman RL; Doak B; Ursby T; Håkansson M; Logan DT; Mueller U

Current status and future opportunities for serial crystallography at MAX IV Laboratory.

Published 2020 in J Synchrotron Radiat, 27: 1095-1102

Consortium for Functional Glycomics (CFG):

■ Expand all ■ Collapse all

© 2010-2016,2022 Justus-Liebig University Giessen, Institute of Veterinary Physiology and Biochemistry, Frankfurter Str. 100, 35392 Giessen, Germany
© 2017-2021 The Glycosciences.de crew
© 1997-2009 German Cancer Research Center Heidelberg, Central Spectroscopic Division, Im Neuenheimer Feld 280, 69120 Heidelberg, Germany
All rights reserved.