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Glycosciences.DB structure entry #22573:
a-D-GalpNAc
[][A-D-GALPNAC]{}
RES
1b:a-dgal-HEX-1:5
2s:n-acetyl
LIN
1:1d(2+1)2n
<?xml version="1.0" encoding="UTF-8"?>
<sugar version="1.0">
<residues>
<basetype id="1" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dgal-HEX-1:5">
<stemtype id="1" type="dgal" />
</basetype>
<substituent id="2" name="n-acetyl" />
</residues>
<linkages>
<connection id="1" parent="1" child="2">
<linkage id="1" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
</linkages>
</sugar>
3D Structure Model| Superclasses: |
Residues:
|
NMR Proton Chemical Shift Info| MHz | 0 | ||||||
| Temperature | 70 | ||||||
| Solvent | D2O | ||||||
| Residue | Linkage | Proton | PPM | JFrom | JTo | Hz | Note |
| Monosaccharid | H1 | 5.280 | note | ||||
| Monosaccharid | H2 | 4.190 | note | ||||
| Monosaccharid | H3 | 3.950 | note | ||||
| Monosaccharid | H4 | 4.050 | note | ||||
| Monosaccharid | H5 | 4.130 | note | ||||
| Monosaccharid | H6 a | 3.790 | note | ||||
| Monosaccharid | H6 b | 3.790 | note | ||||
| Monosaccharid | CH3 | 2.060 | note | ||||
NMR Carbon Chemical Shift Info| MHz | 0 | ||||||
| Temperature | 70 | ||||||
| Solvent | D2O | ||||||
| Residue | Linkage | Carbon | PPM | JFrom | JTo | Hz | Note |
| Monosaccharid | C1 | 91.95 | note | ||||
| Monosaccharid | C2 | 51.16 | note | ||||
| Monosaccharid | C3 | 68.40 | note | ||||
| Monosaccharid | C4 | 69.56 | note | ||||
| Monosaccharid | C5 | 71.36 | note | ||||
| Monosaccharid | C6 | 62.11 | note | ||||
| Monosaccharid | CH3 | 22.91 | note | ||||
| Monosaccharid | CO | 175.43 | note | ||||
PDB references: 421 - 5 of 42 PDB entries
PDB ID 7jnb:
The structure of CBM32-1 and CBM32-2 domains from Clostridium perfringens ZmpB in complex with GalNAc
Description: F5/8 type C domain protein (E.C.3.-.-.-)
Source: Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 / NCIMB 6125 / NCTC 8237 / Type A)
Experimental method: X-RAY DIFFRACTION
Resolution: 2Å
Release date: 2021-02-03
Entry features 1 distinct glycan structures [1 instances].
PDB ID 7jnf:
The structure of CBM32-1 and CBM32-2 domains from Clostridium perfringens ZmpB in complex with GalNAc
Description: F5/8 type C domain protein (E.C.3.-.-.-)
Source: Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 / NCIMB 6125 / NCTC 8237 / Type A)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1Å
Release date: 2021-02-03
Entry features 1 distinct glycan structures [1 instances].
PDB ID 5wzn:
Alpha-N-acetylgalactosaminidase NagBb from Bifidobacterium bifidum - GalNAc complex
Description: Alpha-N-acetylgalactosaminidase (E.C.3.2.1.49)
Source: Bifidobacterium bifidum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1Å
Release date: 2017-06-07
Entry features 1 distinct glycan structures [2 instances].
PDB ID 5t52:
LECTIN FROM BAUHINIA FORFICATA IN COMPLEX WITH GALNAC
Description: Lectin
Source:
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7Å
Release date: 2016-12-28
Entry features 2 distinct glycan structures [2 instances].
PDB ID 4zfu:
Structural studies on a non-toxic homologue of type II RIPs from Momordica charantia (bitter gourd) in complex with N-acetyl D galactosamine
Description: rRNA N-glycosidase (E.C.3.2.2.22)
Source: Momordica charantia
Experimental method: X-RAY DIFFRACTION
Resolution: 2.53Å
Release date: 2016-03-23
Entry features 4 distinct glycan structures [4 instances].
Literature references: 101 - 5 of 10 literature references
Reference #21807
Bojar D; Meche L; Meng G; Eng W; Smith DF; Cummings RD; Mahal LK
A Useful Guide to Lectin Binding: Machine-Learning Directed Annotation of 57 Unique Lectin Specificities.
Published 2022 in ACS Chem Biol, : epub ahead of print
Reference contains 73 structures
Reference #21576
Obukhova P; Tsygankova S; Chinarev A; Shilova N; Nokel A; Kosma P; Bovin N
Are there specific antibodies against Neu5Gc epitopes in the blood of healthy individuals?
Published 2020 in Glycobiology, 30: 395-406
Reference contains 19 structures
Reference #20916
Taylor ME; Snelling T; Smith DF; Drickamer K
Absence of a human ortholog of rodent Kupffer cell galactose-binding receptor encoded by the CLEC4f gene.
Published 2019 in Glycobiology, 29: 332-345
Reference contains 25 structures
Reference #21166
Bello-Gil D; Audebert C; Olivera-Ardid S; Pérez-Cruz M; Even G; Khasbiullina N; Gantois N; Shilova N; Merlin S; Costa C; Bovin N; Mañez R
The Formation of Glycan-Specific Natural Antibodies Repertoire in GalT-KO Mice Is Determined by Gut Microbiota.
Published 2019 in Front Immunol, 10: 342
Reference contains 32 structures
Reference #20891
Pearce OMT
Cancer glycan epitopes: biosynthesis, structure and function.
Published 2018 in Glycobiology, 28: 670-696
Reference contains 26 structures
1 - 5 of 28 literature references from PDB entries
Reference #19057
Sousa BL; Silva Filho JC; Kumar P; Pereira RI; Łyskowski A; Rocha BA; Delatorre P; Bezerra GA; Nagano CS; Gruber K; Cavada BS
High-resolution structure of a new Tn antigen-binding lectin from Vatairea macrocarpa and a comparative analysis of Tn-binding legume lectins.
Published 2015 in Int. J. Biochem. Cell Biol., 59: 103-10
Reference #19210
Kita A; Jimbo M; Sakai R; Morimoto Y; Miki K
Crystal structure of a symbiosis-related lectin from octocoral.
Published 2015 in Glycobiology, 25: 1016-23
Reference contains 2 structures
Reference #18869
Wang KC; Lyu SY; Liu YC; Chang CY; Wu CJ; Li TL
Insights into the binding specificity and catalytic mechanism of N-acetylhexosamine 1-phosphate kinases through multiple reaction complexes.
Published 2014 in Acta Crystallogr. D Biol. Crystallogr., 70: 1401-10
Reference #18779
Pham TT; Stinson B; Thiyagarajan N; Lizotte-Waniewski M; Brew K; Acharya KR
Structures of complexes of a metal-independent glycosyltransferase GT6 from Bacteroides ovatus with UDP-N-acetylgalactosamine (UDP-GalNAc) and its hydrolysis products.
Published 2014 in J. Biol. Chem., 289: 8041-50
Reference #18605
Sharma A; Pohlentz G; Bobbili KB; Jeyaprakash AA; Chandran T; Mormann M; Swamy MJ; Vijayan M
The sequence and structure of snake gourd (Trichosanthes anguina) seed lectin, a three-chain nontoxic homologue of type II RIPs.
Published 2013 in Acta Crystallogr. D Biol. Crystallogr., 69: 1493-503
Consortium for Functional Glycomics (CFG):
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