Glycosciences.de - Glycosciences.DB entry 22441

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Glycosciences.DB structure entry #22441:

Format: CarbBank LINUCS GlycoCT_condensed GlycoCT_xml


    a-D-Neup5Ac-(2-8)-a-D-Neup5Ac-(2-3)-b-D-Galp-(1-4)-b-D-Glcp
                                             |
                            b-D-GalpNAc-(1-4)+


RES
1b:b-dglc-HEX-1:5
2b:b-dgal-HEX-1:5
3b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d
4s:n-acetyl
5b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d
6s:n-acetyl
7b:b-dgal-HEX-1:5
8s:n-acetyl
LIN
1:1o(4+1)2d
2:2o(3+2)3d
3:3d(5+1)4n
4:3o(8+2)5d
5:5d(5+1)6n
6:2o(4+1)7d
7:7d(2+1)8n


<?xml version="1.0" encoding="UTF-8"?>
 <sugar version="1.0">
 <residues>
 <basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
 <stemtype id="1" type="dglc" />
 </basetype>
 <basetype id="2" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
 <stemtype id="1" type="dgal" />
 </basetype>
 <basetype id="3" anomer="a" superclass="non" ringStart="2" ringEnd="6" name="a-dgro-dgal-NON-2:6|1:a|2:keto|3:d">
 <stemtype id="1" type="dgro" />
 <stemtype id="2" type="dgal" />
 <modification type="a" pos_one="1" />
 <modification type="keto" pos_one="2" />
 <modification type="d" pos_one="3" />
 </basetype>
 <substituent id="4" name="n-acetyl" />
 <basetype id="5" anomer="a" superclass="non" ringStart="2" ringEnd="6" name="a-dgro-dgal-NON-2:6|1:a|2:keto|3:d">
 <stemtype id="1" type="dgro" />
 <stemtype id="2" type="dgal" />
 <modification type="a" pos_one="1" />
 <modification type="keto" pos_one="2" />
 <modification type="d" pos_one="3" />
 </basetype>
 <substituent id="6" name="n-acetyl" />
 <basetype id="7" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
 <stemtype id="1" type="dgal" />
 </basetype>
 <substituent id="8" name="n-acetyl" />
 </residues>
 <linkages>
 <connection id="1" parent="1" child="2">
 <linkage id="1" parentType="o" childType="d">
 <parent pos="4" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="2" parent="2" child="3">
 <linkage id="2" parentType="o" childType="d">
 <parent pos="3" />
 <child pos="2" />
 </linkage>
 </connection>
 <connection id="3" parent="3" child="4">
 <linkage id="3" parentType="d" childType="n">
 <parent pos="5" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="4" parent="3" child="5">
 <linkage id="4" parentType="o" childType="d">
 <parent pos="8" />
 <child pos="2" />
 </linkage>
 </connection>
 <connection id="5" parent="5" child="6">
 <linkage id="5" parentType="d" childType="n">
 <parent pos="5" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="6" parent="2" child="7">
 <linkage id="6" parentType="o" childType="d">
 <parent pos="4" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="7" parent="7" child="8">
 <linkage id="7" parentType="d" childType="n">
 <parent pos="2" />
 <child pos="1" />
 </linkage>
 </connection>
 </linkages>
 </sugar>

download coordinates

Corresponding entries: 2

1 - 2 of 2 entries with matching glycan part

Structure entry #167: Glycosphingolipid GD2

b-D-GalpNAc-(1-4)+ | b-D-Galp-(1-4)-b-D-Glcp-(1-1)-Ceramide | a-D-Neup5Ac-(2-8)-a-D-Neup5Ac-(2-3)+

: 177

Taxons: 10

Structure entry #25113:

a-D-Neup5Ac-(2-8)-a-D-Neup5Ac-(2-3)-b-D-Galp-(1-4)-b-D-Glcp-(1-1)-Cer | b-D-GalpNAc-(1-4)+

no Ref

Taxons

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Motifs: 1

GD2 (Show) (Search Database)

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General Structure Data

Chemical Formula:
Molec. Weight:
# Atoms:
# Residues:	5
# Heavy Atoms:

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Composition

Superclasses:

Neu		Hex
NeuAc	2	Hex	2
		HexNAc	1

Residues:

Residue	Count
A-D-NEUP5AC	2
B-D-GALP	1
B-D-GALPNAC	1
B-D-GLCP	1

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PDB references: 1

1 - 1 of 1 PDB entries

PDB ID 4tuo: Crystal structure of monoclonal antibody against neuroblastoma associated antigen.

Description: Heavy chain of monoclonal antibody against neuroblastoma associated antigen, Light chain of monoclonal antibody against neuroblastoma associated antigen

Source: Mus musculus

Experimental method: X-RAY DIFFRACTION

Resolution: 1.55Å

Release date: 2015-07-15

Entry features 2 distinct glycan structures [2 instances].

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Literature references: 5