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Glycosciences.DB structure entry #22441:
a-D-Neup5Ac-(2-8)-a-D-Neup5Ac-(2-3)-b-D-Galp-(1-4)-b-D-Glcp
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b-D-GalpNAc-(1-4)+
[][B-D-GLCP]{[(4+1)][B-D-GALP]{[(3+2)][A-D-NEUP5AC]{[(8+2)][A-D-NEUP5AC]{}}[(4+1)][B-D-GALPNAC]{}}}
RES
1b:b-dglc-HEX-1:5
2b:b-dgal-HEX-1:5
3b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d
4s:n-acetyl
5b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d
6s:n-acetyl
7b:b-dgal-HEX-1:5
8s:n-acetyl
LIN
1:1o(4+1)2d
2:2o(3+2)3d
3:3d(5+1)4n
4:3o(8+2)5d
5:5d(5+1)6n
6:2o(4+1)7d
7:7d(2+1)8n
<?xml version="1.0" encoding="UTF-8"?>
<sugar version="1.0">
<residues>
<basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<basetype id="2" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
<stemtype id="1" type="dgal" />
</basetype>
<basetype id="3" anomer="a" superclass="non" ringStart="2" ringEnd="6" name="a-dgro-dgal-NON-2:6|1:a|2:keto|3:d">
<stemtype id="1" type="dgro" />
<stemtype id="2" type="dgal" />
<modification type="a" pos_one="1" />
<modification type="keto" pos_one="2" />
<modification type="d" pos_one="3" />
</basetype>
<substituent id="4" name="n-acetyl" />
<basetype id="5" anomer="a" superclass="non" ringStart="2" ringEnd="6" name="a-dgro-dgal-NON-2:6|1:a|2:keto|3:d">
<stemtype id="1" type="dgro" />
<stemtype id="2" type="dgal" />
<modification type="a" pos_one="1" />
<modification type="keto" pos_one="2" />
<modification type="d" pos_one="3" />
</basetype>
<substituent id="6" name="n-acetyl" />
<basetype id="7" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
<stemtype id="1" type="dgal" />
</basetype>
<substituent id="8" name="n-acetyl" />
</residues>
<linkages>
<connection id="1" parent="1" child="2">
<linkage id="1" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
<connection id="2" parent="2" child="3">
<linkage id="2" parentType="o" childType="d">
<parent pos="3" />
<child pos="2" />
</linkage>
</connection>
<connection id="3" parent="3" child="4">
<linkage id="3" parentType="d" childType="n">
<parent pos="5" />
<child pos="1" />
</linkage>
</connection>
<connection id="4" parent="3" child="5">
<linkage id="4" parentType="o" childType="d">
<parent pos="8" />
<child pos="2" />
</linkage>
</connection>
<connection id="5" parent="5" child="6">
<linkage id="5" parentType="d" childType="n">
<parent pos="5" />
<child pos="1" />
</linkage>
</connection>
<connection id="6" parent="2" child="7">
<linkage id="6" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
<connection id="7" parent="7" child="8">
<linkage id="7" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
</linkages>
</sugar>

1 - 2 of 2 entries with matching glycan part

b-D-GalpNAc-(1-4)+
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b-D-Galp-(1-4)-b-D-Glcp-(1-1)-Ceramide
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a-D-Neup5Ac-(2-8)-a-D-Neup5Ac-(2-3)+
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Taxons: 10 |

a-D-Neup5Ac-(2-8)-a-D-Neup5Ac-(2-3)-b-D-Galp-(1-4)-b-D-Glcp-(1-1)-Cer
|
b-D-GalpNAc-(1-4)+
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Taxons |
- GD2 (Show) (Search Database)
Chemical Formula: | ||
Molec. Weight: | ||
# Atoms: | ||
# Residues: | 5 | |
# Heavy Atoms: |
Superclasses:
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Residues:
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1 - 1 of 1 PDB entries

PDB ID 4tuo:
Crystal structure of monoclonal antibody against neuroblastoma associated antigen.
Description: Heavy chain of monoclonal antibody against neuroblastoma associated antigen, Light chain of monoclonal antibody against neuroblastoma associated antigen
Source: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55Å
Release date: 2015-07-15
Entry features 2 distinct glycan structures [2 instances].
1 - 5 of 5 literature references

Reference #21773
Wu X; Ye J; DeLaitsch AT; Rashidijahanabad Z; Lang S; Kakeshpour T; Zhao Y; Ramadan S; Saavedra PV; Yuzbasiyan-Gurkan V; Kavunja H; Cao H; Gildersleeve JC; Huang X
Chemoenzymatic Synthesis of 9NHAc-GD2 Antigen to Overcome the Hydrolytic Instability of O-Acetylated-GD2 for Anticancer Conjugate Vaccine Development.
Published 2021 in Angew Chem Int Ed Engl, 60: 24179-24188
Reference contains 6 structures

Reference #20891
Pearce OMT
Cancer glycan epitopes: biosynthesis, structure and function.
Published 2018 in Glycobiology, 28: 670-696
Reference contains 26 structures

Reference #20978
McMorran BJ; McCarthy FE; Gibbs EM; Pang M; Marshall JL; Nairn AV; Moremen KW; Crosbie-Watson RH; Baum LG
Differentiation-related glycan epitopes identify discrete domains of the muscle glycocalyx.
Published 2016 in Glycobiology, 26: 1120-1132
Reference contains 17 structures

Reference #14551
Ruan S; Raj BK; Lloyd KO
Relationship of glycosyltransferases and mRNA levels to ganglioside expression in neuroblastoma and melanoma cells.
Published 1999 in J Neurochem, 72: 514-521
Reference contains 2 structures

Reference #14550
Erbacher P ; Bettinger T ; Belguise-Valladier P ; Zou S ; Coll JL ; Behr JP ; Remy JS
Transfection and physical properties of various saccharide, poly(ethylene glycol), and antibody-derivatized polyethylenimines (PEI).
Published 1999 in J Gene Med, 1: 210-222
Reference contains 1 structure
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