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Glycosciences.DB structure entry #22213:

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Format: CarbBank LINUCS GlycoCT_condensed GlycoCT_xml


 a-D-GalpNAc-(1-3)-b-D-GalpNAc


RES
1b:b-dgal-HEX-1:5
2s:n-acetyl
3b:a-dgal-HEX-1:5
4s:n-acetyl
LIN
1:1d(2+1)2n
2:1o(3+1)3d
3:3d(2+1)4n


<?xml version="1.0" encoding="UTF-8"?>
 <sugar version="1.0">
 <residues>
 <basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
 <stemtype id="1" type="dgal" />
 </basetype>
 <substituent id="2" name="n-acetyl" />
 <basetype id="3" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dgal-HEX-1:5">
 <stemtype id="1" type="dgal" />
 </basetype>
 <substituent id="4" name="n-acetyl" />
 </residues>
 <linkages>
 <connection id="1" parent="1" child="2">
 <linkage id="1" parentType="d" childType="n">
 <parent pos="2" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="2" parent="1" child="3">
 <linkage id="2" parentType="o" childType="d">
 <parent pos="3" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="3" parent="3" child="4">
 <linkage id="3" parentType="d" childType="n">
 <parent pos="2" />
 <child pos="1" />
 </linkage>
 </connection>
 </linkages>
 </sugar>

SNFG-style Graphics

3D Structure Model

download coordinates

Corresponding entries: 2

1 - 2 of 2 entries with matching glycan part

Structure entry #14488:

a-D-GalpNAc-(1-3)-b-D-GalpNAc-(1-1)-Methyl

no 3d model

no NMR spectra

literature references

no GlycoMaps

Taxons

Structure entry #14494:

a-D-GalpNAc-(1-3)-b-D-GalpNAc-(1-9)-9-hydroxy-Nonanoate-(1-1)-Methyl

no 3d model

no NMR spectra

literature references

no GlycoMaps

Taxons

General Structure Data

Chemical Formula:	C₁₆H₂₈N₂O₁₁		#C	#H	#O	#N
Molec. Weight:	424		16	28	11	2
# Atoms:	57
# Residues:	2
# Heavy Atoms:	29

Superclasses:

Hex
HexNAc	2

Residues:

Residue	Count
A-D-GALPNAC	1
B-D-GALPNAC	1

Conformational maps: 1

Map ID: 7257

Disaccharide Fragment: a-D-GalpNAc-(1-3)-b-D-GalpNAc

Linkage Path: 3

Method: MD MM3(1996) Tinker 4 HTMD, 1000K, 10ns

Literature references: 6

1 - 5 of 6 literature references

Reference #21807

Bojar D; Meche L; Meng G; Eng W; Smith DF; Cummings RD; Mahal LK

A Useful Guide to Lectin Binding: Machine-Learning Directed Annotation of 57 Unique Lectin Specificities.

Published 2022 in ACS Chem Biol, : epub ahead of print

Reference contains 73 structures

Reference #20916

Taylor ME; Snelling T; Smith DF; Drickamer K

Absence of a human ortholog of rodent Kupffer cell galactose-binding receptor encoded by the CLEC4f gene.

Published 2019 in Glycobiology, 29: 332-345

Reference contains 25 structures

Reference #20811

Sato T; Tateno H; Kaji H; Chiba Y; Kubota T; Hirabayashi J; Narimatsu H

Engineering of recombinant Wisteria floribunda agglutinin specifically binding to GalNAcβ1,4GlcNAc (LacdiNAc).

Published 2017 in Glycobiology, 27: 743–754

Reference contains 20 structures

Reference #20943

Gildersleeve JC; Wright WS

Diverse molecular recognition properties of blood group A binding monoclonal antibodies.

Published 2016 in Glycobiology, 26: 443-8

Reference contains 14 structures

Reference #20966

Grant OC; Tessier MB; Meche L; Mahal LK; Foley BL; Woods RJ

Combining 3D structure with glycan array data provides insight into the origin of glycan specificity.

Published 2016 in Glycobiology, 26: 772-783

Reference contains 22 structures

Consortium for Functional Glycomics (CFG):

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