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Glycosciences.DB structure entry #19992: Blood group A Type 6 Glycan
a-D-GalpNAc-(1-3)+
|
b-D-Galp-(1-4)-b-D-Glcp
|
a-L-Fucp-(1-2)+
[][B-D-GLCP]{[(4+1)][B-D-GALP]{[(2+1)][A-L-FUCP]{}[(3+1)][A-D-GALPNAC]{}}}
RES
1b:b-dglc-HEX-1:5
2b:b-dgal-HEX-1:5
3b:a-lgal-HEX-1:5|6:d
4b:a-dgal-HEX-1:5
5s:n-acetyl
LIN
1:1o(4+1)2d
2:2o(2+1)3d
3:2o(3+1)4d
4:4d(2+1)5n
<?xml version="1.0" encoding="UTF-8"?>
<sugar version="1.0">
<residues>
<basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<basetype id="2" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
<stemtype id="1" type="dgal" />
</basetype>
<basetype id="3" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-lgal-HEX-1:5|6:d">
<stemtype id="1" type="lgal" />
<modification type="d" pos_one="6" />
</basetype>
<basetype id="4" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dgal-HEX-1:5">
<stemtype id="1" type="dgal" />
</basetype>
<substituent id="5" name="n-acetyl" />
</residues>
<linkages>
<connection id="1" parent="1" child="2">
<linkage id="1" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
<connection id="2" parent="2" child="3">
<linkage id="2" parentType="o" childType="d">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="3" parent="2" child="4">
<linkage id="3" parentType="o" childType="d">
<parent pos="3" />
<child pos="1" />
</linkage>
</connection>
<connection id="4" parent="4" child="5">
<linkage id="4" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
</linkages>
</sugar>

1 - 3 of 3 entries with matching glycan part

a-D-GalpNAc-(1-3)+
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b-D-Galp-(1-4)-b-D-Glcp-(1-1)-Ceramide
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a-L-Fucp-(1-2)+
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Taxons: 1 |

a-D-GalpNAc-(1-3)+
|
b-D-Galp-(1-4)-b-D-Glcp-(1-9)-9-hydroxy-Nonanoate-(1-1)-Methyl
|
a-L-Fucp-(1-2)+
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Taxons |

a-D-GalpNAc-(1-3)+
|
b-D-Galp-(1-4)-b-D-Glcp-(1-1)-2-propenamide
|
a-L-Fucp-(1-2)+
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Taxons |
- Blood Group A Antigen (Show) (Search Database)
- Blood group A Type 6
- BGA type 6
Chemical Formula: | C26H45N1O20 | #C | #H | #O | #N | |
Molec. Weight: | 691 | 26 | 45 | 20 | 1 | |
# Atoms: | 92 | |||||
# Residues: | 4 | |||||
# Heavy Atoms: | 47 |
Superclasses:
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Residues:
|
1 - 2 of 2 PDB entries

PDB ID 2j1u:
STRUCTURE OF A STREPTOCOCCUS PNEUMONIAE FUCOSE BINDING MODULE IN COMPLEX WITH THE BLOOD GROUP A-TETRASACCHARIDE
Description: FUCOLECTIN-RELATED PROTEIN
Source: STREPTOCOCCUS PNEUMONIAE
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8Å
Release date: 2006-09-06
Entry features 1 distinct glycan structures [1 instances].

PDB ID 1ulf:
CGL2 in complex with Blood Group A tetrasaccharide
Description: galectin-2
Source: Coprinopsis cinerea
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36Å
Release date: 2004-04-20
Entry features 1 distinct glycan structures [2 instances].

Map ID: 8447
Disaccharide Fragment: a-L-Fucp-(1-2)-b-D-Galp
Linkage Path: 42
Method: MD MM3(1996) Tinker 4 HTMD, 1000K, 30ns

Map ID: 8448
Disaccharide Fragment: b-D-Galp-(1-4)-b-D-Glcp
Linkage Path: 4
Method: MD MM3(1996) Tinker 4 HTMD, 1000K, 30ns

Map ID: 8449
Disaccharide Fragment: a-D-GalpNAc-(1-3)-b-D-Galp
Linkage Path: 43
Method: MD MM3(1996) Tinker 4 HTMD, 1000K, 30ns
1 - 5 of 5 literature references

Reference #21992
Blenda AV; Kamili NA; Wu SC; Abel WF; Ayona D; Gerner-Smidt C; Ho AD; Benian GM; Cummings RD; Arthur CM; Stowell SR
Galectin-9 recognizes and exhibits antimicrobial activity toward microbes expressing blood group-like antigens.
Published 2022 in J Biol Chem, 298: 101704
Reference contains 42 structures

Reference #22000
Sojitra M; Sarkar S; Maghera J; Rodrigues E; Carpenter EJ; Seth S; Ferrer Vinals D; Bennett NJ; Reddy R; Khalil A; Xue X; Bell MR; Zheng RB; Zhang P; Nycholat C; Bailey JJ; Ling CC; Lowary TL; Paulson JC; Macauley MS; Derda R
Genetically encoded multivalent liquid glycan array displayed on M13 bacteriophage.
Published 2021 in Nat Chem Biol, 17: 806-816
Reference contains 65 structures

Reference #20943
Gildersleeve JC; Wright WS
Diverse molecular recognition properties of blood group A binding monoclonal antibodies.
Published 2016 in Glycobiology, 26: 443-8
Reference contains 14 structures

Reference #21004
Han L; Kitova EN; Tan M; Jiang X; Pluvinage B; Boraston AB; Klassen JS
Affinities of human histo-blood group antigens for norovirus capsid protein complexes.
Published 2015 in Glycobiology, 25: 170-80
Reference contains 14 structures

Reference #12788
Norberg T; Kallin E
Preparation of carbohydrate acrylate and methacrylate copolymers
Published 1990 in PCT Int Appl, 0: 1-24
Reference contains 18 structures
1 - 2 of 2 literature references from PDB entries

Reference #16714
Boraston AB; Wang D; Burke RD
Blood group antigen recognition by a Streptococcus pneumoniae virulence factor.
Published 2006 in J. Biol. Chem., 281: 35263-71

Reference #16429
Walser PJ; Haebel PW; Künzler M; Sargent D; Kües U; Aebi M; Ban N
Structure and functional analysis of the fungal galectin CGL2.
Published 2004 in Structure, 12: 689-702
Consortium for Functional Glycomics (CFG):
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