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Glycosciences.DB structure entry #18691:
b-D-GlcpNAc-(1-4)+
|
b-D-GlcpNAc-(1-4)-Asn
|
a-L-Fucp-(1-3)+
[][ASN]{[(4+1)][B-D-GLCPNAC]{[(3+1)][A-L-FUCP]{}[(4+1)][B-D-GLCPNAC]{}}}
<?xml version="1.0" encoding="UTF-8"?>
<sugar version="1.0">
<residues>
<basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="2" name="n-acetyl" />
<basetype id="3" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-lgal-HEX-1:5|6:d">
<stemtype id="1" type="lgal" />
<modification type="d" pos_one="6" />
</basetype>
<basetype id="4" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="5" name="n-acetyl" />
</residues>
<linkages>
<connection id="1" parent="1" child="2">
<linkage id="1" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="2" parent="1" child="3">
<linkage id="2" parentType="o" childType="d">
<parent pos="3" />
<child pos="1" />
</linkage>
</connection>
<connection id="3" parent="1" child="4">
<linkage id="3" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
<connection id="4" parent="4" child="5">
<linkage id="4" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
</linkages>
<aglyca>
<historicalData>
<entry id="0" name="ASN" toResidue="1">
<linkage parentType="n" childType="x">
<parent pos="4" />
<child pos="1" />
</linkage>
</entry>
</historicalData>
</aglyca>
</sugar>
3D Structure Model1 - 3 of 3 entries with matching glycan part
Structure entry #25958:
b-D-GlcpNAc-(1-4)+
|
b-D-GlcpNAc
|
a-L-Fucp-(1-3)+
 |
 |
 |
 : 2 |
 : 4 |
Taxons |
Structure entry #27674:
b-D-GlcpNAc-(1-4)+
|
b-D-GlcpNAc-(1-1)-methyl
|
a-L-Fucp-(1-3)+
 |
|
 : 1 |
: 1 |
 |
Taxons |
Structure entry #28737:
b-D-GlcpNAc-(1-4)+
|
b-D-GlcpNAc-(1-1)-6-hydroxy-hexanoate
|
a-L-Fucp-(1-3)+
|
|
|
: 2 |
|
Taxons |
| Chemical Formula: | C26H44N4O16 | #C | #H | #O | #N | |
| Molec. Weight: | 668 | 26 | 44 | 16 | 4 | |
| # Atoms: | 90 | |||||
| # Residues: | 4 | |||||
| # Heavy Atoms: | 46 | |||||
Superclasses:
|
Residues:
|
||||||||||||||
PDB references: 861 - 5 of 86 PDB entries
PDB ID 7uot:
Native Lassa glycoprotein in complex with neutralizing antibodies 8.9F and 37.2D
Description:
Source: Lassa virus, Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Release date: 2022-11-02
Entry features 8 distinct glycan structures [33 instances].
PDB ID 8cyb:
SARS-CoV-2 Spike protein in complex with a pan-sarbecovirus nanobody 1-8
Description:
Source: Severe acute respiratory syndrome coronavirus 2, Lama glama
Experimental method: ELECTRON MICROSCOPY
Release date: 2022-07-06
Entry features 8 distinct glycan structures [54 instances].
PDB ID 7whu:
Human Neutrophil Elastase in-complex with Ecotin Peptide
Description:
Source: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89Å
Release date: 2022-07-06
Entry features 5 distinct glycan structures [8 instances].
PDB ID 7whh:
Crystal structure of SARS-CoV-2 omicron RBD and human ACE2
Description:
Source: Homo sapiens, Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6Å
Release date: 2022-06-01
Entry features 2 distinct glycan structures [5 instances].
PDB ID 7kd0:
Ricin bound to VHH antibody V2C11
Description:
Source: Ricinus communis, Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 2.768Å
Release date: 2021-08-04
Entry features 3 distinct glycan structures [5 instances].
Literature references: 11 - 5 of 48 literature references from PDB entries
Reference #22054
Xiang Y; Huang W; Liu H; Sang Z; Nambulli S; Tubiana J; Williams KL; Duprex WP; Schneidman-Duhovny D; Wilson IA; Taylor DJ; Shi Y
Superimmunity by pan-sarbecovirus nanobodies.
Published 2022 in Cell Rep, 39: 111004
Reference #22537
Li H; Buck T; Zandonatti M; Yin J; Moon-Walker A; Fang J; Koval A; Heinrich ML; Rowland MM; Diaz Avalos R; Schendel SL; Parekh D; Zyla D; Enriquez A; Harkins S; Sullivan B; Smith V; Chukwudozie O; Watanabe R; Robinson JE; Garry RF; Branco LM; Hastie KM;
A cocktail of protective antibodies subverts the dense glycan shield of Lassa virus.
Published 2022 in Sci Transl Med, 14: eabq0991
Reference #21534
Rudolph MJ; Poon AY; Kavaliauskiene S; Myrann AG; Reynolds-Peterson C; Davis SA; Sandvig K; Vance DJ; Mantis NJ
Structural Analysis of Toxin-Neutralizing, Single-Domain Antibodies that Bridge Ricin's A-B Subunit Interface.
Published 2021 in J Mol Biol, 433: 167086
Reference #21351
Azarkan M; Maquoi E; Delbrassine F; Herman R; M'Rabet N; Calvo Esposito R; Charlier P; Kerff F
Structures of the free and inhibitors-bound forms of bromelain and ananain from Ananas comosus stem and in vitro study of their cytotoxicity.
Published 2020 in Sci Rep, 10: 19570
Reference #22213
Feder D; McGeary RP; Mitić N; Lonhienne T; Furtado A; Schulz BL; Henry RJ; Schmidt S; Guddat LW; Schenk G
Structural elements that modulate the substrate specificity of plant purple acid phosphatases: Avenues for improved phosphorus acquisition in crops.
Published 2020 in Plant Sci, 294: 110445
Consortium for Functional Glycomics (CFG):
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