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Glycosciences.DB structure entry #18557: Blood group B Type 6 Glycan

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Format: CarbBank LINUCS GlycoCT_condensed GlycoCT_xml


 a-D-Galp-(1-3)+
               |
          b-D-Galp-(1-4)-b-D-Glcp
               |
 a-L-Fucp-(1-2)+


RES
1b:b-dglc-HEX-1:5
2b:b-dgal-HEX-1:5
3b:a-lgal-HEX-1:5|6:d
4b:a-dgal-HEX-1:5
LIN
1:1o(4+1)2d
2:2o(2+1)3d
3:2o(3+1)4d


<?xml version="1.0" encoding="UTF-8"?>
 <sugar version="1.0">
 <residues>
 <basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
 <stemtype id="1" type="dglc" />
 </basetype>
 <basetype id="2" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
 <stemtype id="1" type="dgal" />
 </basetype>
 <basetype id="3" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-lgal-HEX-1:5|6:d">
 <stemtype id="1" type="lgal" />
 <modification type="d" pos_one="6" />
 </basetype>
 <basetype id="4" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dgal-HEX-1:5">
 <stemtype id="1" type="dgal" />
 </basetype>
 </residues>
 <linkages>
 <connection id="1" parent="1" child="2">
 <linkage id="1" parentType="o" childType="d">
 <parent pos="4" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="2" parent="2" child="3">
 <linkage id="2" parentType="o" childType="d">
 <parent pos="2" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="3" parent="2" child="4">
 <linkage id="3" parentType="o" childType="d">
 <parent pos="3" />
 <child pos="1" />
 </linkage>
 </connection>
 </linkages>
 </sugar>

SNFG-style Graphics

3D Structure Model

download coordinates

Corresponding entries: 1

1 - 1 of 1 entries with matching glycan part

Structure entry #4953:

a-D-Galp-(1-3)+ | b-D-Galp-(1-4)-b-D-Glcp-(1-1)-Ceramide | a-L-Fucp-(1-2)+

no 3d model

no NMR spectra

literature references

no GlycoMaps

Blood group B Type 6
BGB type 6

General Structure Data

Chemical Formula:	C₂₄H₄₂O₂₀		#C	#H	#O
Molec. Weight:	650		24	42	20
# Atoms:	86
# Residues:	4
# Heavy Atoms:	44

Superclasses:

Hex
Hex	3
dHex	1

Residues:

Residue	Count
A-D-GALP	1
A-L-FUCP	1
B-D-GALP	1
B-D-GLCP	1

PDB references: 1

1 - 1 of 1 PDB entries

PDB ID 3zwe: Structure of BambL, a lectin from Burkholderia ambifaria, complexed with blood group B epitope

Description: BAMBL LECTIN

Source: BURKHOLDERIA AMBIFARIA

Experimental method: X-RAY DIFFRACTION

Resolution: 1.75Å

Release date: 2011-12-21

Entry features 3 distinct glycan structures [6 instances].

Literature references: 4

1 - 4 of 4 literature references

Reference #21992

Blenda AV; Kamili NA; Wu SC; Abel WF; Ayona D; Gerner-Smidt C; Ho AD; Benian GM; Cummings RD; Arthur CM; Stowell SR

Galectin-9 recognizes and exhibits antimicrobial activity toward microbes expressing blood group-like antigens.

Published 2022 in J Biol Chem, 298: 101704

Reference contains 42 structures

Reference #21004

Han L; Kitova EN; Tan M; Jiang X; Pluvinage B; Boraston AB; Klassen JS

Affinities of human histo-blood group antigens for norovirus capsid protein complexes.

Published 2015 in Glycobiology, 25: 170-80

Reference contains 14 structures

Reference #11151

Heerze LD; Kelm MA; Talbot JA; Armstrong GD

Oligosaccharide sequences attached to an inert support (SYNSORB) as potential therapy for antibiotic-associated diarrhea and pseudomembranous colitis

Published 1994 in J Infect Dis, 169: 1291-1296

Reference contains 1 structure

Reference #12779

Karlsson KA; Norrby E; Wadell G

Antiviral agents

Published 1986 in PCT Int Appl, 0: 1-100

Reference contains 10 structures

Further literature references from PDB entries: 1

1 - 1 of 1 literature references from PDB entries

Reference #18053

Audfray A; Claudinon J; Abounit S; Ruvoën-Clouet N; Larson G; Smith DF; Wimmerová M; Le Pendu J; Römer W; Varrot A; Imberty A

Fucose-binding lectin from opportunistic pathogen Burkholderia ambifaria binds to both plant and human oligosaccharidic epitopes.

Published 2012 in J. Biol. Chem., 287: 4335-47

Consortium for Functional Glycomics (CFG):

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