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Glycosciences.DB structure entry #18363: LewisX trisaccharide (alpha-anomeric form)

Format: CarbBank LINUCS GlycoCT_condensed GlycoCT_xml


 b-D-Galp-(1-4)+
               |
          a-D-GlcpNAc
               |
 a-L-Fucp-(1-3)+


RES
1b:a-dglc-HEX-1:5
2s:n-acetyl
3b:a-lgal-HEX-1:5|6:d
4b:b-dgal-HEX-1:5
LIN
1:1d(2+1)2n
2:1o(3+1)3d
3:1o(4+1)4d


<?xml version="1.0" encoding="UTF-8"?>
 <sugar version="1.0">
 <residues>
 <basetype id="1" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dglc-HEX-1:5">
 <stemtype id="1" type="dglc" />
 </basetype>
 <substituent id="2" name="n-acetyl" />
 <basetype id="3" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-lgal-HEX-1:5|6:d">
 <stemtype id="1" type="lgal" />
 <modification type="d" pos_one="6" />
 </basetype>
 <basetype id="4" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
 <stemtype id="1" type="dgal" />
 </basetype>
 </residues>
 <linkages>
 <connection id="1" parent="1" child="2">
 <linkage id="1" parentType="d" childType="n">
 <parent pos="2" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="2" parent="1" child="3">
 <linkage id="2" parentType="o" childType="d">
 <parent pos="3" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="3" parent="1" child="4">
 <linkage id="3" parentType="o" childType="d">
 <parent pos="4" />
 <child pos="1" />
 </linkage>
 </connection>
 </linkages>
 </sugar>

download coordinates

Corresponding entries: 1

1 - 1 of 1 entries with matching glycan part

Structure entry #7764:

b-D-Galp-(1-4)+ | a-D-GlcpNAc-(1-O)-P | a-L-Fucp-(1-3)+

General Structure Data

Chemical Formula:	C₂₀H₃₅N₁O₁₅	#C	#H	#O	#N
Molec. Weight:	529	20	35	15	1
# Atoms:	71
# Residues:	3
# Heavy Atoms:	36

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Composition

Superclasses:

Hex
Hex	1
dHex	1
HexNAc	1

Residues:

Residue	Count
A-D-GLCPNAC	1
A-L-FUCP	1
B-D-GALP	1

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PDB references: 5

1 - 5 of 5 PDB entries

PDB ID 6hjd: Cholera toxin classical B-pentamer in complex with Lewis-x

Description: Cholera toxin B subunit

Source: Vibrio cholerae

Experimental method: X-RAY DIFFRACTION

Resolution: 1.54Å

Release date: 2019-08-14

Entry features 3 distinct glycan structures [9 instances].

PDB ID 6orf: Crystal structure of SpGH29

Description: Glycoside hydrolase

Source: Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)

Experimental method: X-RAY DIFFRACTION

Resolution: 1.7Å

Release date: 2019-07-10

Entry features 1 distinct glycan structures [2 instances].

PDB ID 5ajc: X-ray structure of RSL lectin in complex with sialyl lewis X tetrasaccharide

Description: PUTATIVE FUCOSE-BINDING LECTIN PROTEIN

Source: RALSTONIA SOLANACEARUM

Experimental method: X-RAY DIFFRACTION

Resolution: 1.7Å

Release date: 2016-03-02

Entry features 5 distinct glycan structures [6 instances].

PDB ID 4x0c: Crystal structure of P domain from norovirus strain NSW0514 in complex with HBGA type Lex (triglycan)

Description: Protruding domain of norovirus strain Saga4

Source: Norovirus Hu/GII.4/Sydney/NSW0514/2012/AU

Experimental method: X-RAY DIFFRACTION

Resolution: 1.72Å

Release date: 2014-12-17

Entry features 1 distinct glycan structures [2 instances].

PDB ID 1sl6: Crystal Structure of a fragment of DC-SIGNR (containg the carbohydrate recognition domain and two repeats of the neck) complexed with Lewis-x.

Description: C-type lectin DC-SIGNR

Source: Homo sapiens

Experimental method: X-RAY DIFFRACTION

Resolution: 2.25Å

Release date: 2004-06-15

Entry features 1 distinct glycan structures [6 instances].

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Literature references: 1