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Glycosciences.DB structure entry #18363: LewisX trisaccharide (alpha-anomeric form)
b-D-Galp-(1-4)+
|
a-D-GlcpNAc
|
a-L-Fucp-(1-3)+
[][A-D-GLCPNAC]{[(3+1)][A-L-FUCP]{}[(4+1)][B-D-GALP]{}}
RES
1b:a-dglc-HEX-1:5
2s:n-acetyl
3b:a-lgal-HEX-1:5|6:d
4b:b-dgal-HEX-1:5
LIN
1:1d(2+1)2n
2:1o(3+1)3d
3:1o(4+1)4d
<?xml version="1.0" encoding="UTF-8"?>
<sugar version="1.0">
<residues>
<basetype id="1" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="2" name="n-acetyl" />
<basetype id="3" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-lgal-HEX-1:5|6:d">
<stemtype id="1" type="lgal" />
<modification type="d" pos_one="6" />
</basetype>
<basetype id="4" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
<stemtype id="1" type="dgal" />
</basetype>
</residues>
<linkages>
<connection id="1" parent="1" child="2">
<linkage id="1" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="2" parent="1" child="3">
<linkage id="2" parentType="o" childType="d">
<parent pos="3" />
<child pos="1" />
</linkage>
</connection>
<connection id="3" parent="1" child="4">
<linkage id="3" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
</linkages>
</sugar>

1 - 1 of 1 entries with matching glycan part

b-D-Galp-(1-4)+
|
a-D-GlcpNAc-(1-O)-P
|
a-L-Fucp-(1-3)+
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Taxons: 1 |
Chemical Formula: | C20H35N1O15 | #C | #H | #O | #N | |
Molec. Weight: | 529 | 20 | 35 | 15 | 1 | |
# Atoms: | 71 | |||||
# Residues: | 3 | |||||
# Heavy Atoms: | 36 |
Superclasses:
|
Residues:
|
1 - 5 of 5 PDB entries

PDB ID 6hjd:
Cholera toxin classical B-pentamer in complex with Lewis-x
Description: Cholera toxin B subunit
Source: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54Å
Release date: 2019-08-14
Entry features 3 distinct glycan structures [9 instances].

PDB ID 6orf:
Crystal structure of SpGH29
Description: Glycoside hydrolase
Source: Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7Å
Release date: 2019-07-10
Entry features 1 distinct glycan structures [2 instances].

PDB ID 5ajc:
X-ray structure of RSL lectin in complex with sialyl lewis X tetrasaccharide
Description: PUTATIVE FUCOSE-BINDING LECTIN PROTEIN
Source: RALSTONIA SOLANACEARUM
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7Å
Release date: 2016-03-02
Entry features 5 distinct glycan structures [6 instances].

PDB ID 4x0c:
Crystal structure of P domain from norovirus strain NSW0514 in complex with HBGA type Lex (triglycan)
Description: Protruding domain of norovirus strain Saga4
Source: Norovirus Hu/GII.4/Sydney/NSW0514/2012/AU
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72Å
Release date: 2014-12-17
Entry features 1 distinct glycan structures [2 instances].

PDB ID 1sl6:
Crystal Structure of a fragment of DC-SIGNR (containg the carbohydrate recognition domain and two repeats of the neck) complexed with Lewis-x.
Description: C-type lectin DC-SIGNR
Source: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25Å
Release date: 2004-06-15
Entry features 1 distinct glycan structures [6 instances].
1 - 3 of 3 literature references from PDB entries

Reference #15480
Topin J; Lelimousin M; Arnaud J; Audfray A; Pérez S; Varrot A; Imberty A
The Hidden Conformation of Lewis x, a Human Histo-Blood Group Antigen, Is a Determinant for Recognition by Pathogen Lectins.
Published 2016 in ACS Chem. Biol., 11: 2011-20
Reference contains 2 structures

Reference #19039
Singh BK; Leuthold MM; Hansman GS
Human noroviruses' fondness for histo-blood group antigens.
Published 2015 in J. Virol., 89: 2024-40

Reference #16468
Guo Y; Feinberg H; Conroy E; Mitchell DA; Alvarez R; Blixt O; Taylor ME; Weis WI; Drickamer K
Structural basis for distinct ligand-binding and targeting properties of the receptors DC-SIGN and DC-SIGNR.
Published 2004 in Nat. Struct. Mol. Biol., 11: 591-8
NCBI Taxonomy ID | Scientific Name |
10090 | Mus musculus |
Consortium for Functional Glycomics (CFG):
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