Glycosciences.de - Glycosciences.DB entry 1516

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Glycosciences.DB structure entry #1516:


 a-D-Manp-(1-3)-b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn


<?xml version="1.0" encoding="UTF-8"?>
 <sugar version="1.0">
 <residues>
 <basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
 <stemtype id="1" type="dglc" />
 </basetype>
 <substituent id="2" name="n-acetyl" />
 <basetype id="3" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
 <stemtype id="1" type="dglc" />
 </basetype>
 <substituent id="4" name="n-acetyl" />
 <basetype id="5" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dman-HEX-1:5">
 <stemtype id="1" type="dman" />
 </basetype>
 <basetype id="6" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dman-HEX-1:5">
 <stemtype id="1" type="dman" />
 </basetype>
 </residues>
 <linkages>
 <connection id="1" parent="1" child="2">
 <linkage id="1" parentType="d" childType="n">
 <parent pos="2" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="2" parent="1" child="3">
 <linkage id="2" parentType="o" childType="d">
 <parent pos="4" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="3" parent="3" child="4">
 <linkage id="3" parentType="d" childType="n">
 <parent pos="2" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="4" parent="3" child="5">
 <linkage id="4" parentType="o" childType="d">
 <parent pos="4" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="5" parent="5" child="6">
 <linkage id="5" parentType="o" childType="d">
 <parent pos="3" />
 <child pos="1" />
 </linkage>
 </connection>
 </linkages>
 <aglyca>
 <historicalData>
 <entry id="0" name="ASN" toResidue="1">
 <linkage parentType="n" childType="x">
 <parent pos="4" />
 <child pos="1" />
 </linkage>
 </entry>
 </historicalData>
 </aglyca>
 </sugar>

download coordinates

Corresponding entries: 4

1 - 4 of 4 entries with matching glycan part

Structure entry #3410:

a-D-Manp-(1-3)-b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn-(2-1)-Acetate

: 2

Taxons

Structure entry #5705:

a-D-Manp-(1-3)-b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-7)-<7-amino-4-methyl-2h-1-benzopyran-2-one>

: 1

Taxons

Structure entry #23248:

a-D-Manp-(1-3/6)-b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc

: 1

Taxons

Structure entry #23412:

a-D-Manp-(1-3)-b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc

Taxons

General Structure Data

Chemical Formula:	C₃₂H₅₄N₄O₂₂	#C	#H	#O	#N
Molec. Weight:	846	32	54	22	4
# Atoms:	112
# Residues:	5
# Heavy Atoms:	58

▴

▶

Composition

Superclasses:

Hex
Hex	2
HexNAc	2

Residues:

Residue	Count
A-D-MANP	1
ASN	1
B-D-GLCPNAC	2
B-D-MANP	1

▴

▶

PDB references: 526

1 - 5 of 526 PDB entries

PDB ID 8as0: PD-1 extracellular domain in complex with Fab fragment from D12 antibody

Description:

Source: Homo sapiens

Experimental method: X-RAY DIFFRACTION

Resolution: 3.5Å

Release date: 2022-11-23

Entry features 6 distinct glycan structures [19 instances].

PDB ID 8d43: Cryo-EM structure of human Kidney Glucosidase II

Description:

Source: Homo sapiens

Experimental method: ELECTRON MICROSCOPY

Release date: 2022-11-16

Entry features 1 distinct glycan structures [1 instances].

PDB ID 7za1: GPC3-Unc5D octamer structure and role in cell migration

Description:

Source: Rattus norvegicus, Homo sapiens

Experimental method: X-RAY DIFFRACTION

Resolution: 4.1Å

Release date: 2022-11-02

Entry features 3 distinct glycan structures [17 instances].

PDB ID 7z53: Structure of native leukocyte myeloperoxidase in complex with a truncated version (SPIN truncated) of the Staphyloccal Peroxidase Inhibitor SPIN from Staphylococcus aureus

Description:

Source: Homo sapiens, Staphylococcus aureus

Experimental method: X-RAY DIFFRACTION

Resolution: 2.28Å

Release date: 2022-10-26

Entry features 7 distinct glycan structures [26 instances].

PDB ID 8dua: SIV E660.CR54 SOS-2P Env Trimer with ITS92.02

Description:

Source: Simian immunodeficiency virus, Macaca mulatta

Experimental method: ELECTRON MICROSCOPY

Release date: 2022-10-26

Entry features 4 distinct glycan structures [42 instances].