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Glycosciences.DB structure entry #1516:
a-D-Manp-(1-3)-b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn
[][ASN]{[(4+1)][B-D-GLCPNAC]{[(4+1)][B-D-GLCPNAC]{[(4+1)][B-D-MANP]{[(3+1)][A-D-MANP]{}}}}}
<?xml version="1.0" encoding="UTF-8"?>
<sugar version="1.0">
<residues>
<basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="2" name="n-acetyl" />
<basetype id="3" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="4" name="n-acetyl" />
<basetype id="5" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dman-HEX-1:5">
<stemtype id="1" type="dman" />
</basetype>
<basetype id="6" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dman-HEX-1:5">
<stemtype id="1" type="dman" />
</basetype>
</residues>
<linkages>
<connection id="1" parent="1" child="2">
<linkage id="1" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="2" parent="1" child="3">
<linkage id="2" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
<connection id="3" parent="3" child="4">
<linkage id="3" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="4" parent="3" child="5">
<linkage id="4" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
<connection id="5" parent="5" child="6">
<linkage id="5" parentType="o" childType="d">
<parent pos="3" />
<child pos="1" />
</linkage>
</connection>
</linkages>
<aglyca>
<historicalData>
<entry id="0" name="ASN" toResidue="1">
<linkage parentType="n" childType="x">
<parent pos="4" />
<child pos="1" />
</linkage>
</entry>
</historicalData>
</aglyca>
</sugar>

1 - 4 of 4 entries with matching glycan part

a-D-Manp-(1-3)-b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn-(2-1)-Acetate
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a-D-Manp-(1-3)-b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-7)-<7-amino-4-methyl-2h-1-benzopyran-2-one>
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a-D-Manp-(1-3/6)-b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc
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Taxons |

a-D-Manp-(1-3)-b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc
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Taxons |
Chemical Formula: | C32H54N4O22 | #C | #H | #O | #N | |
Molec. Weight: | 846 | 32 | 54 | 22 | 4 | |
# Atoms: | 112 | |||||
# Residues: | 5 | |||||
# Heavy Atoms: | 58 |
Superclasses:
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Residues:
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1 - 5 of 500 PDB entries

PDB ID 7qti:
SARS-CoV-2 S Omicron Spike B.1.1.529 - 3-P2G3 and 1-P5C3 Fabs (Global)
Description:
Source: HOMO SAPIENS, Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Release date: 2022-08-03
Entry features 4 distinct glycan structures [43 instances].

PDB ID 7p57:
VSG2 mutant structure lacking the calcium binding pocket
Description:
Source: Trypanosoma brucei brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.961Å
Release date: 2022-07-27
Entry features 1 distinct glycan structures [1 instances].

PDB ID 7q4e:
Local refinement structure of a single N-domain of full-length, dimeric, soluble somatic angiotensin I-converting enzyme
Description:
Source: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Release date: 2022-07-20
Entry features 6 distinct glycan structures [8 instances].

PDB ID 7q4d:
Local refinement structure of the two interacting N-domains of full-length, dimeric, soluble somatic angiotensin I-converting enzyme
Description:
Source: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Release date: 2022-07-20
Entry features 6 distinct glycan structures [16 instances].

PDB ID 8cyb:
SARS-CoV-2 Spike protein in complex with a pan-sarbecovirus nanobody 1-8
Description:
Source: Severe acute respiratory syndrome coronavirus 2, Lama glama
Experimental method: ELECTRON MICROSCOPY
Release date: 2022-07-06
Entry features 8 distinct glycan structures [54 instances].
1 - 2 of 2 literature references

Reference #9960
Aleshin A; Golubev A; Firsov LM; Honzatko RB
Crystal structure of glucoamylase from Aspergillus awamori var. X100 to 2.2-A resolution
Published 1992 in J Biol Chem, 267: 19291-19298
Reference contains 2 structures

Reference #436
Maley F; Trimble RB; Tarentino AL; Plummer TH
Characterization of glycoproteins and their associated oligosaccharides through the use of endoglycosidases
Published 1989 in Anal Biochem, 180: 195-204
Reference contains 16 structures
1 - 5 of 226 literature references from PDB entries

Reference #21929
Gao N; Gai Y; Meng L; Wang C; Wang W; Li X; Gu T; Louder MK; Doria-Rose NA; Wiehe K; Nazzari AF; Olia AS; Gorman J; Rawi R; Wu W; Smith C; Khant H; de Val N; Yu B; Luo J; Niu H; Tsybovsky Y; Liao H; Kepler TB; Kwong PD; Mascola JR; Qin C; Zhou T; Yu X; G
Development of Neutralization Breadth against Diverse HIV-1 by Increasing Ab-Ag Interface on V2.
Published 2022 in Adv Sci (Weinh), : e2200063

Reference #22427
Fenwick C; Turelli P; Ni D; Perez L; Lau K; Herate C; Marlin R; Lana E; Pellaton C; Raclot C; Esteves-Leuenberger L; Campos J; Farina A; Fiscalini F; Dereuddre-Bosquet N; Relouzat F; Abdelnabi R; Foo CS; Neyts J; Leyssen P; Lévy Y; Pojer F; Stahlberg H;
Patient-derived monoclonal antibody neutralizes SARS-CoV-2 Omicron variants and confers full protection in monkeys.
Published 2022 in Nat Microbiol, :

Reference #22054
Xiang Y; Huang W; Liu H; Sang Z; Nambulli S; Tubiana J; Williams KL; Duprex WP; Schneidman-Duhovny D; Wilson IA; Taylor DJ; Shi Y
Superimmunity by pan-sarbecovirus nanobodies.
Published 2022 in Cell Rep, 39: 111004

Reference #21443
Jette CA; Barnes CO; Kirk SM; Melillo B; Smith AB; Bjorkman PJ
Cryo-EM structures of HIV-1 trimer bound to CD4-mimetics BNM-III-170 and M48U1 adopt a CD4-bound open conformation.
Published 2021 in Nat Commun, 12: 1950

Reference #21533
Kondo T; Kichijo M; Maruta A; Nakaya M; Takenaka S; Arakawa T; Fushinobu S; Sakamoto T
Structural and functional analysis of gum arabic l-rhamnose-α-1,4-d-glucuronate lyase establishes a novel polysaccharide lyase family.
Published 2021 in J Biol Chem, 297: 101001
Reference contains 9 structures
Consortium for Functional Glycomics (CFG):
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