- ☰
- Add title
- Add keywords
- Add publication
- Leave comment

Glycosciences.DB structure entry #14893:
a-L-Fucp-(1-2)-b-D-Galp
[][B-D-GALP]{[(2+1)][A-L-FUCP]{}}
RES
1b:b-dgal-HEX-1:5
2b:a-lgal-HEX-1:5|6:d
LIN
1:1o(2+1)2d
<?xml version="1.0" encoding="UTF-8"?>
<sugar version="1.0">
<residues>
<basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
<stemtype id="1" type="dgal" />
</basetype>
<basetype id="2" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-lgal-HEX-1:5|6:d">
<stemtype id="1" type="lgal" />
<modification type="d" pos_one="6" />
</basetype>
</residues>
<linkages>
<connection id="1" parent="1" child="2">
<linkage id="1" parentType="o" childType="d">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
</linkages>
</sugar>

1 - 5 of 15 entries with matching glycan part

a-L-Fucp-(1-2)-b-D-Galp-(1-9)-9-hydroxy-Nonanoate-(1-1)-Methyl
![]() |
![]() |
![]() |
![]() |
![]() |
Taxons: 1 |

a-L-Fucp-(1-2)-b-D-Galp-(1-1)-ethyl
![]() |
![]() |
![]() |
![]() |
![]() |
Taxons |

a-L-Fucp-(1-2)-b-D-Galp-(1-1)-methyl
![]() |
![]() |
![]() |
![]() |
![]() |
Taxons |

a-L-Fucp-(1-2)-b-D-Galp-(1-1)-<4-nitrophenol>
![]() |
![]() |
![]() |
![]() |
![]() |
Taxons |

a-L-Fucp-(1-2)-b-D-Galp-(1-O)-<BSA>
![]() |
![]() |
![]() |
![]() |
![]() |
Taxons |
- Blood Group H Antigen (Show) (Search Database)
Chemical Formula: | C12H22O10 | #C | #H | #O | |
Molec. Weight: | 326 | 12 | 22 | 10 | |
# Atoms: | 44 | ||||
# Residues: | 2 | ||||
# Heavy Atoms: | 22 |
Superclasses:
|
Residues:
|
MHz | 0 | ||||||
Temperature | 70 | ||||||
Solvent | D2O | ||||||
Residue | Linkage | Proton | PPM | JFrom | JTo | Hz | Note |
B-D-GALP | H1 | 4.660 | note | ||||
B-D-GALP | H2 | 3.560 | note | ||||
B-D-GALP | H3 | 3.830 | note | ||||
B-D-GALP | H4 | 3.940 | note | ||||
B-D-GALP | H5 | 3.690 | note | ||||
B-D-GALP | H6 a | 3.760 | note | ||||
B-D-GALP | H6 b | 3.760 | note | ||||
A-L-FUCP | 2 | H1 | 5.200 | note | |||
A-L-FUCP | 2 | H2 | 3.810 | note | |||
A-L-FUCP | 2 | H3 | 3.880 | note | |||
A-L-FUCP | 2 | H4 | 3.820 | note | |||
A-L-FUCP | 2 | H5 | 4.300 | note | |||
A-L-FUCP | 2 | H6 | 1.200 | note |
MHz | 0 | ||||||
Temperature | 70 | ||||||
Solvent | D2O | ||||||
Residue | Linkage | Carbon | PPM | JFrom | JTo | Hz | Note |
B-D-GALP | C1 | 96.21 | note | ||||
B-D-GALP | C2 | 80.38 | note | ||||
B-D-GALP | C3 | 74.29 | note | ||||
B-D-GALP | C4 | 69.78 | note | ||||
B-D-GALP | C5 | 75.84 | note | ||||
B-D-GALP | C6 | 61.81 | note | ||||
A-L-FUCP | 2 | C1 | 100.74 | note | |||
A-L-FUCP | 2 | C2 | 69.46 | note | |||
A-L-FUCP | 2 | C3 | 70.63 | note | |||
A-L-FUCP | 2 | C4 | 72.84 | note | |||
A-L-FUCP | 2 | C5 | 67.73 | note | |||
A-L-FUCP | 2 | C6 | 16.03 | note |
1 - 5 of 6 PDB entries

PDB ID 4d4u:
Crystal Structure of Fucose binding lectin from Aspergillus Fumigatus (AFL) in complex with LewisY tetrasaccharide.
Description: FUCOSE-SPECIFIC LECTIN FLEA
Source: ASPERGILLUS FUMIGATUS
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99Å
Release date: 2015-03-11
Entry features 4 distinct glycan structures [10 instances].

PDB ID 3zwe:
Structure of BambL, a lectin from Burkholderia ambifaria, complexed with blood group B epitope
Description: BAMBL LECTIN
Source: BURKHOLDERIA AMBIFARIA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75Å
Release date: 2011-12-21
Entry features 3 distinct glycan structures [6 instances].

PDB ID 3zw2:
Structure of the lectine Bambl from Burkholderia ambifaria in complex with blood group H type 1 tetrasaccharide
Description: BAMBL LECTIN
Source: BURKHOLDERIA AMBIFARIA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6Å
Release date: 2011-11-16
Entry features 3 distinct glycan structures [6 instances].

PDB ID 3q39:
Crystal Structure of P Domain from Norwalk Virus Strain Vietnam 026 in complex with HBGA type H2 (diglycan)
Description: Capsid protein
Source: Norwalk virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25Å
Release date: 2011-05-11
Entry features 1 distinct glycan structures [1 instances].

PDB ID 2wmh:
CRYSTAL STRUCTURE OF THE CATALYTIC MODULE OF A FAMILY 98 GLYCOSIDE HYDROLASE FROM STREPTOCOCCUS PNEUMONIAE TIGR4 IN COMPLEX WITH THE H-DISACCHARIDE BLOOD GROUP ANTIGEN.
Description: FUCOLECTIN-RELATED PROTEIN
Source: STREPTOCOCCUS PNEUMONIAE
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7Å
Release date: 2009-07-14
Entry features 1 distinct glycan structures [1 instances].

Map ID: 7123
Disaccharide Fragment: a-L-Fucp-(1-2)-b-D-Galp
Linkage Path: 2
Method: MD MM3(1996) Tinker 4 HTMD, 1000K, 10ns
1 - 5 of 8 literature references

Reference #21971
Yamamoto F
A historical overview of advances in molecular genetic/genomic studies of the ABO blood group system.
Published 2022 in Glycoconj J, 39: 207-218
Reference contains 3 structures

Reference #21704
Mateoiu C; Vitiazeva V; Kristjansdottir B; Weijdegård B; Örnros J; Gallini R; Kamali-Moghaddam M; Sundfeldt K; Karlsson NG
Analysis of blood group antigens on MUC5AC in mucinous ovarian cancer tissues using in situ proximity ligation assay.
Published 2021 in Glycobiology, 31: 1464-1471
Reference contains 3 structures

Reference #22000
Sojitra M; Sarkar S; Maghera J; Rodrigues E; Carpenter EJ; Seth S; Ferrer Vinals D; Bennett NJ; Reddy R; Khalil A; Xue X; Bell MR; Zheng RB; Zhang P; Nycholat C; Bailey JJ; Ling CC; Lowary TL; Paulson JC; Macauley MS; Derda R
Genetically encoded multivalent liquid glycan array displayed on M13 bacteriophage.
Published 2021 in Nat Chem Biol, 17: 806-816
Reference contains 65 structures

Reference #21847
Lardone RD; Garay YC; Parodi P; de la Fuente S; Angeloni G; Bravo EO; Schmider AK; Irazoqui FJ
How glycobiology can help us treat and beat the COVID-19 pandemic.
Published 2021 in J Biol Chem, 296: 100375
Reference contains 11 structures

Reference #21626
Rubén LC; Laura MR; Almudena FB; Emilio GM
Glycan array analysis of Pholiota squarrosa lectin and other fucose-oriented lectins.
Published 2021 in Glycobiology, 31: 459-476
Reference contains 10 structures
1 - 5 of 5 literature references from PDB entries

Reference #19144
Houser J; Komarek J; Cioci G; Varrot A; Imberty A; Wimmerova M
Structural insights into Aspergillus fumigatus lectin specificity: AFL binding sites are functionally non-equivalent.
Published 2015 in Acta Crystallogr. D Biol. Crystallogr., 71: 442-53

Reference #18053
Audfray A; Claudinon J; Abounit S; Ruvoën-Clouet N; Larson G; Smith DF; Wimmerová M; Le Pendu J; Römer W; Varrot A; Imberty A
Fucose-binding lectin from opportunistic pathogen Burkholderia ambifaria binds to both plant and human oligosaccharidic epitopes.
Published 2012 in J. Biol. Chem., 287: 4335-47

Reference #17837
Hansman GS; Biertümpfel C; Georgiev I; McLellan JS; Chen L; Zhou T; Katayama K; Kwong PD
Crystal structures of GII.10 and GII.12 norovirus protruding domains in complex with histo-blood group antigens reveal details for a potential site of vulnerability.
Published 2011 in J. Virol., 85: 6687-701

Reference #17356
Higgins MA; Whitworth GE; El Warry N; Randriantsoa M; Samain E; Burke RD; Vocadlo DJ; Boraston AB
Differential recognition and hydrolysis of host carbohydrate antigens by Streptococcus pneumoniae family 98 glycoside hydrolases.
Published 2009 in J. Biol. Chem., 284: 26161-73

Reference #19894
Loris R; Hamelryck T; Bouckaert J; Wyns L
Legume lectin structure.
Published 1998 in Biochim. Biophys. Acta, 1383: 9-36
Consortium for Functional Glycomics (CFG):
×
Add title to glycan structure entry:
×
Add keyword to glycan structure entry:
×
Add publication to glycan structure entry:
×