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Glycosciences.DB structure entry #142: Glycosphingolipid GM1 / GM1a


 b-D-Galp-(1-3)-b-D-GalpNAc-(1-4)+
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                            b-D-Galp-(1-4)-b-D-Glcp-(1-1)-Ceramide
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                a-D-Neup5Ac-(2-3)+

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Corresponding entries: 22

1 - 5 of 22 entries with matching glycan part

Structure entry #765:

b-D-Galp-(1-3)-b-D-GalpNAc-(1-4)+ | b-D-Galp-(1-4)-b-D-Glcp-(1-1)-<2-D-erythro-2-acetamide-octadec-4E-en-1,3-diol> | a-D-Neup5Ac-(2-3)+

: 2

Taxons

Structure entry #766:

b-D-Galp-(1-3)-b-D-GalpNAc-(1-4)+ | b-D-Galp-(1-4)-b-D-Glcp-(1-1)-sphingosine-(2-1)-<2-chloroacetate> | a-D-Neup5Ac-(2-3)+

: 5

Taxons

Structure entry #2677:

b-D-Galp-(1-3)-b-D-GalpNAc-(1-4)+ | b-D-Galp-(1-4)-b-D-Glcp | a-D-Neup5Ac-(2-3)+

: 13

: 97

Taxons

Structure entry #2875:

b-D-Galp-(1-3)-b-D-GalpNAc-(1-4)+ | b-D-Galp-(1-4)-b-D-Glcp-(1-1)-hexyl | a-D-Neup5Ac-(2-3)+

: 1

Taxons

Structure entry #3946:

b-D-Galp-(1-3)-b-D-GalpNAc-(1-4)+ | b-D-Galp-(1-4)-b-D-Glcp-(1-1)-2R-amino-Octadec-4E-en-1,3S-diol | a-D-Neup5Ac-(2-3)+

GSL core, ganglio-type (Show) (Search Database)
GM1a (Show) (Search Database)

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Trivial names

GM1
GM1a
II3Neu5AcGg4Cer

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Keywords

glycosphingolipid

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General Structure Data

Chemical Formula:	C₇₀H₁₂₅N₃O₃₁	#C	#H	#O	#N
Molec. Weight:	1504	70	125	31	3
# Atoms:	229
# Residues:	6
# Heavy Atoms:	104

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Composition

Superclasses:

Neu		Hex
NeuAc	1	Hex	3
		HexNAc	1

Residues:

Residue	Count
A-D-NEUP5AC	1
B-D-GALP	2
B-D-GALPNAC	1
B-D-GLCP	1
CERAMIDE	1

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NMR Carbon Chemical Shift Info

MHz	0
Temperature	0
Solvent	D2O
Residue	Linkage	Carbon	PPM	JFrom	JTo	Hz	Note
b-D-Glcp	1,4,1	C1	103.40			0
b-D-Glcp	1,4,1	C2	74.10			0
b-D-Glcp	1,4,1	C3	75.20			0
b-D-Glcp	1,4,1	C4	79.80			0
b-D-Glcp	1,4,1	C5	75.70			0
b-D-Glcp	1,4,1	C6	61.00			0
b-D-Galp	4,1,4,1	C1	103.40			0
b-D-Galp	4,1,4,1	C2	70.70			0
b-D-Galp	4,1,4,1	C3	75.20			0
b-D-Galp	4,1,4,1	C4	78.10			0
b-D-Galp	4,1,4,1	C5	75.00			0
b-D-Galp	4,1,4,1	C6	61.80			0
b-D-GalpNAc	4,4,1,4,1	C1	103.40			0
b-D-GalpNAc	4,4,1,4,1	C2	52.80			0
b-D-GalpNAc	4,4,1,4,1	C3	81.50			0
b-D-GalpNAc	4,4,1,4,1	C4	68.80			0
b-D-GalpNAc	4,4,1,4,1	C5	75.70			0
b-D-GalpNAc	4,4,1,4,1	C6	61.40			0
b-D-Galp	3,4,4,1,4,1	C1	105.60			0
b-D-Galp	3,4,4,1,4,1	C2	71.70			0
b-D-Galp	3,4,4,1,4,1	C3	73.60			0
b-D-Galp	3,4,4,1,4,1	C4	69.20			0
b-D-Galp	3,4,4,1,4,1	C5	75.70			0
b-D-Galp	3,4,4,1,4,1	C6	61.40			0
a-D-Neup5Ac	3,4,1,4,1	C1	174.50			0
a-D-Neup5Ac	3,4,1,4,1	C2	102.50			0
a-D-Neup5Ac	3,4,1,4,1	C3	37.80			0
a-D-Neup5Ac	3,4,1,4,1	C4	69.20			0
a-D-Neup5Ac	3,4,1,4,1	C5	52.00			0
a-D-Neup5Ac	3,4,1,4,1	C6	73.60			0
a-D-Neup5Ac	3,4,1,4,1	C7	69.20			0
a-D-Neup5Ac	3,4,1,4,1	C8	72.90			0
a-D-Neup5Ac	3,4,1,4,1	C9	64.00			0

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PDB references: 1

1 - 1 of 1 PDB entries

PDB ID 5j7z: Crystal structure of endoglycoceramidase I from Rhodococ-cus equi in complex with GM1

Description: Putative secreted endoglycosylceramidase

Source: Rhodococcus equi 103S

Experimental method: X-RAY DIFFRACTION

Resolution: 2.15Å

Release date: 2016-04-27

Entry features 1 distinct glycan structures [1 instances].

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Literature references: 629

1 - 5 of 629 literature references

Reference #21161

Akintayo A; Stanley P

Roles for Golgi Glycans in Oogenesis and Spermatogenesis.

Published 2019 in Front Cell Dev Biol, 7: 98

Reference contains 30 structures

Reference #20740

Dunn TM; Tifft CJ; Proia RL

A perilous path: the inborn errors of sphingolipid metabolism.

Published 2019 in J. Lipid Res., 60: 475-483

Reference contains 9 structures

Reference #20841

Chiricozzi E; Maggioni M; di Biase E; Lunghi G; Fazzari M; Loberto N; Elisa M; Scalvini FG; Tedeschi G; Sonnino S

The Neuroprotective Role of the GM1 Oligosaccharide, IINeu5Ac-Gg, in Neuroblastoma Cells.

Published 2019 in Mol. Neurobiol., :

Reference contains 2 structures

Reference #20745

Przybilla MJ; Ou L; Tăbăran AF; Jiang X; Sidhu R; Kell PJ; Ory DS; O'Sullivan MG; Whitley CB

Comprehensive behavioral and biochemical outcomes of novel murine models of GM1-gangliosidosis and Morquio syndrome type B.

Published 2019 in Mol. Genet. Metab., 126: 139-150

Reference contains 4 structures

Reference #20868

Chiricozzi E; Biase ED; Maggioni M; Lunghi G; Fazzari M; Pomè DY; Casellato R; Loberto N; Mauri L; Sonnino S

GM1 promotes TrkA-mediated neuroblastoma cell differentiation by occupying a plasma membrane domain different from TrkA.

Published 2019 in J. Neurochem., :

Reference contains 2 structures

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Taxonomy: 20

NCBI Taxonomy ID	Scientific Name
9913	Bos taurus
7957	Carassius auratus
10141	Cavia porcellus
10150	Chinchillidae
8113	Cichlidae
10026	Cricetinae
10029	Cricetulus griseus
9685	Felis catus
9031	Gallus gallus
9606	Homo sapiens
9542	Macaca fuscata
9544	Macaca mulatta
10090	Mus musculus
9986	Oryctolagus cuniculus
9940	Ovis aries
9557	Papio hamadryas
10114	Rattus
9376	Soricidae
9823	Sus scrofa
9739	Tursiops truncatus

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Crosslinks: 2

Consortium for Functional Glycomics (CFG):

carbGlipid_21020_D000

GlycoEpitope DB:

EP0050

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Glycosciences.DB structure entry #142: Glycosphingolipid GM1 / GM1a

1 - 5 of 22 entries with matching glycan part

1 - 1 of 1 PDB entries

1 - 5 of 629 literature references

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