Glycosciences.de - Glycosciences.DB entry 14

☰
- Add title
- Add keywords
- Add publication
- Leave comment

Glycosciences.DB structure entry #14: XXFG Xyloglucan

■ Expand all ■ Collapse all

Format: CarbBank LINUCS GlycoCT_condensed GlycoCT_xml


 a-L-Fucp-(1-2)-b-D-Galp-(1-2)-a-D-Xylp-(1-6)+
                                             |
                      a-D-Xylp-(1-6)+   b-D-Glcp-(1-4)-D-Glc
                                    |        |
                               b-D-Glcp-(1-4)+
                                    |
       a-D-Xylp-(1-6)-b-D-Glcp-(1-4)+


RES
1b:x-dglc-HEX-x:x
2b:b-dglc-HEX-1:5
3b:b-dglc-HEX-1:5
4b:b-dglc-HEX-1:5
5b:a-dxyl-PEN-1:5
6b:a-dxyl-PEN-1:5
7b:a-dxyl-PEN-1:5
8b:b-dgal-HEX-1:5
9b:a-lgal-HEX-1:5|6:d
LIN
1:1o(4+1)2d
2:2o(4+1)3d
3:3o(4+1)4d
4:4o(6+1)5d
5:3o(6+1)6d
6:2o(6+1)7d
7:7o(2+1)8d
8:8o(2+1)9d


<?xml version="1.0" encoding="UTF-8"?>
 <sugar version="1.0">
 <residues>
 <basetype id="1" anomer="x" superclass="hex" ringStart="-1" ringEnd="-1" name="x-dglc-HEX-x:x">
 <stemtype id="1" type="dglc" />
 </basetype>
 <basetype id="2" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
 <stemtype id="1" type="dglc" />
 </basetype>
 <basetype id="3" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
 <stemtype id="1" type="dglc" />
 </basetype>
 <basetype id="4" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
 <stemtype id="1" type="dglc" />
 </basetype>
 <basetype id="5" anomer="a" superclass="pen" ringStart="1" ringEnd="5" name="a-dxyl-PEN-1:5">
 <stemtype id="1" type="dxyl" />
 </basetype>
 <basetype id="6" anomer="a" superclass="pen" ringStart="1" ringEnd="5" name="a-dxyl-PEN-1:5">
 <stemtype id="1" type="dxyl" />
 </basetype>
 <basetype id="7" anomer="a" superclass="pen" ringStart="1" ringEnd="5" name="a-dxyl-PEN-1:5">
 <stemtype id="1" type="dxyl" />
 </basetype>
 <basetype id="8" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
 <stemtype id="1" type="dgal" />
 </basetype>
 <basetype id="9" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-lgal-HEX-1:5|6:d">
 <stemtype id="1" type="lgal" />
 <modification type="d" pos_one="6" />
 </basetype>
 </residues>
 <linkages>
 <connection id="1" parent="1" child="2">
 <linkage id="1" parentType="o" childType="d">
 <parent pos="4" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="2" parent="2" child="3">
 <linkage id="2" parentType="o" childType="d">
 <parent pos="4" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="3" parent="3" child="4">
 <linkage id="3" parentType="o" childType="d">
 <parent pos="4" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="4" parent="4" child="5">
 <linkage id="4" parentType="o" childType="d">
 <parent pos="6" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="5" parent="3" child="6">
 <linkage id="5" parentType="o" childType="d">
 <parent pos="6" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="6" parent="2" child="7">
 <linkage id="6" parentType="o" childType="d">
 <parent pos="6" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="7" parent="7" child="8">
 <linkage id="7" parentType="o" childType="d">
 <parent pos="2" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="8" parent="8" child="9">
 <linkage id="8" parentType="o" childType="d">
 <parent pos="2" />
 <child pos="1" />
 </linkage>
 </connection>
 </linkages>
 </sugar>

SNFG-style Graphics

3D Structure Model

download coordinates

Blood Group H Antigen (Show) (Search Database)

xyloglucan
hemicellulose
plant cell-wall polysaccharide

General Structure Data

Chemical Formula:	C₅₁H₈₆O₄₂		#C	#H	#O
Molec. Weight:	1370		51	86	42
# Atoms:	179
# Residues:	9
# Heavy Atoms:	93

Superclasses:

Hex		Pent
Hex	5	Pent	3
dHex	1

Residues:

Residue	Count
A-D-XYLP	3
A-L-FUCP	1
B-D-GALP	1
B-D-GLCP	3
D-GLC	1

Literature references: 20

1 - 5 of 20 literature references

Reference #21619

Soto MJ; Prabhakar PK; Wang HT; Backe J; Chapla D; Bartetzko M; Black IM; Azadi P; Peña MJ; Pfrengle F; Moremen KW; Urbanowicz BR; Hahn MG

FUT4 and FUT6 Are Arabinofuranose-Specific Fucosyltransferases.

Published 2021 in Front Plant Sci, 12: 589518

Reference contains 20 structures

Reference #14419

Singh BB; Patel HH; Roepman R; Schick D; Ferreira PA

The zinc finger cluster domain of RanBP2 is a specific docking site for the nuclear export factor, exportin-1.

Published 1999 in J Biol Chem, 274: 37370-37378

Reference contains 1 structure

Reference #11630

McDougall GJ; Fry SC

Fucosylated xyloglucan in suspension-cultured cells of the graminaceous monocotyledon, Festuca arundinacea

Published 1994 in J Plant Physiol, 143: 591-595

Reference contains 1 structure

Reference #13345

Puhlmann J; Bucheli E; Swain MJ; Dunning N; Albersheim P; Darvill AG; Hahn MG

Generation of monoclonal antibodies against plant cell-wall polysaccharides

Published 1994 in Plant Physiol, 104: 699-710

Reference contains 11 structures

Reference #13289

Hayashi T; Takeda T; Ogawa K; Mitsuishi Y

Effects of the degree of polymerization on the binding of xyloglucans to cellulose

Published 1994 in Plant Cell Physiol, 35: 893-899

Reference contains 9 structures

NCBI Taxonomy ID	Scientific Name
4682	Allium sativum
4605	Festuca
3562	Spinacia oleracea

■ Expand all ■ Collapse all

© 2010-2016,2022 Justus-Liebig University Giessen, Institute of Veterinary Physiology and Biochemistry, Frankfurter Str. 100, 35392 Giessen, Germany
© 2017-2021 The Glycosciences.de crew
© 1997-2009 German Cancer Research Center Heidelberg, Central Spectroscopic Division, Im Neuenheimer Feld 280, 69120 Heidelberg, Germany
All rights reserved.