a-D-Galp-(1-6)-a-D-Glcp-(1-2)-b-D-Fruf
[][B-D-FRUF]{[(2+1)][A-D-GLCP]{[(6+1)][A-D-GALP]{}}}
RES
1b:b-dara-HEX-2:5|2:keto
2b:a-dglc-HEX-1:5
3b:a-dgal-HEX-1:5
LIN
1:1o(2+1)2d
2:2o(6+1)3d
<?xml version="1.0" encoding="UTF-8"?>
<sugar version="1.0">
<residues>
<basetype id="1" anomer="b" superclass="hex" ringStart="2" ringEnd="5" name="b-dara-HEX-2:5|2:keto">
<stemtype id="1" type="dara" />
<modification type="keto" pos_one="2" />
</basetype>
<basetype id="2" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<basetype id="3" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dgal-HEX-1:5">
<stemtype id="1" type="dgal" />
</basetype>
</residues>
<linkages>
<connection id="1" parent="1" child="2">
<linkage id="1" parentType="o" childType="d">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="2" parent="2" child="3">
<linkage id="2" parentType="o" childType="d">
<parent pos="6" />
<child pos="1" />
</linkage>
</connection>
</linkages>
</sugar>
1 - 5 of 12 PDB entries
PDB ID 6phx:
SpAga D472N structure in complex with raffinose
Description: Alpha-galactosidase (E.C.3.2.1.22)
Source: Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
Experimental method: X-RAY DIFFRACTION
Resolution: 2Å
Release date: 2019-10-02
Description: ABC transporter sugar-binding protein
Source: Streptococcus pneumoniae TIGR4
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65Å
Release date: 2019-10-02
PDB ID 6epy:
Structure of the PBP MelB (Atu4661) in complex with raffinose from A.fabrum C58
Description: Periplasmic alpha-galactoside-binding protein
Source: Rhizobium radiobacter
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04Å
Release date: 2018-04-11
PDB ID 4zs9:
Raffinose and panose binding protein from Bifidobacterium animalis subsp. lactis Bl-04, bound with raffinose
Description: Sugar binding protein of ABC transporter system
Source: Bifidobacterium animalis subsp. lactis Bl-04
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37Å
Release date: 2016-06-29
PDB ID 4zza:
Raffinose and panose binding protein from Bifidobacterium animalis subsp. lactis Bl-04, bound with raffinose, selenomethionine derivative
Description: Sugar binding protein of ABC transporter system
Source: Bifidobacterium animalis subsp. lactis Bl-04
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02Å
Release date: 2016-06-29
3D Structure Model
NMR Carbon Chemical Shift Info
PDB references: 12
Literature references: 103