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Glycosciences.DB structure entry #1273:

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Format: CarbBank LINUCS GlycoCT_condensed GlycoCT_xml


 a-D-GalpNAc-(1-3)+
                  |
             b-D-Galp-(1-4)+
                  |        |
    a-L-Fucp-(1-2)+     D-Glc
                           |
             a-L-Fucp-(1-3)+


RES
1b:x-dglc-HEX-x:x
2b:a-lgal-HEX-1:5|6:d
3b:b-dgal-HEX-1:5
4b:a-lgal-HEX-1:5|6:d
5b:a-dgal-HEX-1:5
6s:n-acetyl
LIN
1:1o(3+1)2d
2:1o(4+1)3d
3:3o(2+1)4d
4:3o(3+1)5d
5:5d(2+1)6n


<?xml version="1.0" encoding="UTF-8"?>
 <sugar version="1.0">
 <residues>
 <basetype id="1" anomer="x" superclass="hex" ringStart="-1" ringEnd="-1" name="x-dglc-HEX-x:x">
 <stemtype id="1" type="dglc" />
 </basetype>
 <basetype id="2" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-lgal-HEX-1:5|6:d">
 <stemtype id="1" type="lgal" />
 <modification type="d" pos_one="6" />
 </basetype>
 <basetype id="3" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
 <stemtype id="1" type="dgal" />
 </basetype>
 <basetype id="4" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-lgal-HEX-1:5|6:d">
 <stemtype id="1" type="lgal" />
 <modification type="d" pos_one="6" />
 </basetype>
 <basetype id="5" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dgal-HEX-1:5">
 <stemtype id="1" type="dgal" />
 </basetype>
 <substituent id="6" name="n-acetyl" />
 </residues>
 <linkages>
 <connection id="1" parent="1" child="2">
 <linkage id="1" parentType="o" childType="d">
 <parent pos="3" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="2" parent="1" child="3">
 <linkage id="2" parentType="o" childType="d">
 <parent pos="4" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="3" parent="3" child="4">
 <linkage id="3" parentType="o" childType="d">
 <parent pos="2" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="4" parent="3" child="5">
 <linkage id="4" parentType="o" childType="d">
 <parent pos="3" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="5" parent="5" child="6">
 <linkage id="5" parentType="d" childType="n">
 <parent pos="2" />
 <child pos="1" />
 </linkage>
 </connection>
 </linkages>
 </sugar>

SNFG-style Graphics

3D Structure Model

download coordinates

Blood Group A Antigen (Show) (Search Database)

General Structure Data

Chemical Formula:	C₃₂H₅₅N₁O₂₄		#C	#H	#O	#N
Molec. Weight:	837		32	55	24	1
# Atoms:	112
# Residues:	5
# Heavy Atoms:	57

Superclasses:

Hex
Hex	2
dHex	2
HexNAc	1

Residues:

Residue	Count
A-D-GALPNAC	1
A-L-FUCP	2
B-D-GALP	1
D-GLC	1

NMR Proton Chemical Shift Info

MHz	400
Temperature	300
Solvent	D2O
Residue	Linkage	Proton	PPM	JFrom	JTo	Hz	Note
D-Glc		H1A	5.170			0
D-Glc		H1B	4.610			0
D-Glc		H2A	3.770			0
D-Glc		H2B	3.489			0
D-Glc		H3A	3.890			0
D-Glc		H3B	3.694			0
D-Glc		H4A	3.826			0
D-Glc		H4B	3.867			0
D-Glc		H5A	3.905			0
D-Glc		H5B	3.438			0
D-Glc		H6A	3.870			0
D-Glc		H6B	3.805			0
D-Glc		H6'A	3.870			0
D-Glc		H6'B	3.995			0
b-D-Galp	4	H1(A)	4.544			0
b-D-Galp	4	H1(B)	4.541			0
b-D-Galp	4	H2	3.847			0
b-D-Galp	4	H3	3.936			0
b-D-Galp	4	H4	4.196			0
b-D-Galp	4	H5	3.555			0
b-D-Galp	4	H6	3.720			0
b-D-Galp	4	H6'	3.750			0
a-D-GalpNAc	3,4	H1	5.196			0
a-D-GalpNAc	3,4	H2	4.243			0
a-D-GalpNAc	3,4	H3	3.914			0
a-D-GalpNAc	3,4	H4	3.990			0
a-D-GalpNAc	3,4	H5	4.244			0
a-D-GalpNAc	3,4	H6	3.730			0
a-D-GalpNAc	3,4	H6'	3.770			0
a-D-GalpNAc	3,4	NAC	2.039			0
a-L-Fucp	2,4	H1	5.296			0
a-L-Fucp	2,4	H2	3.784			0
a-L-Fucp	2,4	H3	3.703			0
a-L-Fucp	2,4	H4(A)	3.833			0
a-L-Fucp	2,4	H4(B)	3.828			0
a-L-Fucp	2,4	H5(A)	4.388			0
a-L-Fucp	2,4	H5(B)	4.336			0
a-L-Fucp	2,4	CH3	1.292			0
a-L-Fucp	3	H1(A)	5.427			0
a-L-Fucp	3	H1(B)	5.484			0
a-L-Fucp	3	H2	3.793			0
a-L-Fucp	3	H3	3.977			0
a-L-Fucp	3	H4	3.788			0
a-L-Fucp	3	H5(A)	4.851			0
a-L-Fucp	3	H5(B)	4.835			0
a-L-Fucp	3	CH3(A)	1.279			0
a-L-Fucp	3	CH3(B)	1.276			0

Literature references: 14

1 - 5 of 14 literature references

Reference #7819

Johnson PH; Donald ASR; Feeney J; Watkins WM

Reassessment of the acceptor specificity and general properties of the Lewis blood-group gene associated .alpha.-3/4-fucosyltransferase purified from human milk

Published 1992 in Glycoconj J, 9: 251-264

Reference contains 30 structures

Reference #7768

Wieruszeski JM; Michalski JC; Montreuil J; Strecker G

Proton and carbon-13 NMR analysis of four pentasaccharides from urine of blood-group A and B, Leb adults. Confirmation of the structure of two new oligosaccharides: Fuc(.alpha.1-2)[GalNAc(.alpha.1-3)]Gal(.beta.1-3)[Fuc(.alpha.-4)]Glc and Fuc(.alpha.1-2)[

Published 1990 in Glycoconj J, 7: 13-26

Reference contains 1 structure

Reference #4203

Debray H; Montreuil J

Aleuria aurantia agglutinin. A new isolation procedure and further study of its specificity towards various glycopeptides and oligosaccharides

Published 1989 in Carbohydr Res, 185: 15-26

Reference contains 19 structures

Reference #12476

Matsuda T; Kabat EA; Surolia A

Carbohydrate binding specificity of the basic lectin from winged bean (Psophocarpus tetragonolobus)

Published 1989 in Mol Immunol, 26: 189-195

Reference contains 8 structures

Dakour J; Lundblad A; Zopf D

Separation of blood-group A-active oligosaccharides by high-pressure liquid affinity chromatography using a monoclonal antibody bound to concanavalin A silica

Published 1987 in Anal Biochem, 161: 140-143

Reference contains 6 structures

NCBI Taxonomy ID	Scientific Name
9606	Homo sapiens

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