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Glycosciences.DB structure entry #1272:

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Format: CarbBank LINUCS GlycoCT_condensed GlycoCT_xml


 a-D-GalpNAc-(1-3)+
                  |
             b-D-Galp-(1-3)-b-D-GlcpNAc-(1-3)-b-D-Galp-(1-4)-D-Glc
                  |
    a-L-Fucp-(1-2)+


RES
1b:x-dglc-HEX-x:x
2b:b-dgal-HEX-1:5
3b:b-dglc-HEX-1:5
4s:n-acetyl
5b:b-dgal-HEX-1:5
6b:a-lgal-HEX-1:5|6:d
7b:a-dgal-HEX-1:5
8s:n-acetyl
LIN
1:1o(4+1)2d
2:2o(3+1)3d
3:3d(2+1)4n
4:3o(3+1)5d
5:5o(2+1)6d
6:5o(3+1)7d
7:7d(2+1)8n


<?xml version="1.0" encoding="UTF-8"?>
 <sugar version="1.0">
 <residues>
 <basetype id="1" anomer="x" superclass="hex" ringStart="-1" ringEnd="-1" name="x-dglc-HEX-x:x">
 <stemtype id="1" type="dglc" />
 </basetype>
 <basetype id="2" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
 <stemtype id="1" type="dgal" />
 </basetype>
 <basetype id="3" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
 <stemtype id="1" type="dglc" />
 </basetype>
 <substituent id="4" name="n-acetyl" />
 <basetype id="5" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
 <stemtype id="1" type="dgal" />
 </basetype>
 <basetype id="6" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-lgal-HEX-1:5|6:d">
 <stemtype id="1" type="lgal" />
 <modification type="d" pos_one="6" />
 </basetype>
 <basetype id="7" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dgal-HEX-1:5">
 <stemtype id="1" type="dgal" />
 </basetype>
 <substituent id="8" name="n-acetyl" />
 </residues>
 <linkages>
 <connection id="1" parent="1" child="2">
 <linkage id="1" parentType="o" childType="d">
 <parent pos="4" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="2" parent="2" child="3">
 <linkage id="2" parentType="o" childType="d">
 <parent pos="3" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="3" parent="3" child="4">
 <linkage id="3" parentType="d" childType="n">
 <parent pos="2" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="4" parent="3" child="5">
 <linkage id="4" parentType="o" childType="d">
 <parent pos="3" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="5" parent="5" child="6">
 <linkage id="5" parentType="o" childType="d">
 <parent pos="2" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="6" parent="5" child="7">
 <linkage id="6" parentType="o" childType="d">
 <parent pos="3" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="7" parent="7" child="8">
 <linkage id="7" parentType="d" childType="n">
 <parent pos="2" />
 <child pos="1" />
 </linkage>
 </connection>
 </linkages>
 </sugar>

SNFG-style Graphics

3D Structure Model

download coordinates

Blood Group A Antigen (Show) (Search Database)
Neo-Lactosamine (Show) (Search Database)

General Structure Data

Chemical Formula:	C₄₀H₆₈N₂O₃₀		#C	#H	#O	#N
Molec. Weight:	1056		40	68	30	2
# Atoms:	140
# Residues:	6
# Heavy Atoms:	72

Superclasses:

Hex
Hex	3
dHex	1
HexNAc	2

Residues:

Residue	Count
A-D-GALPNAC	1
A-L-FUCP	1
B-D-GALP	2
B-D-GLCPNAC	1
D-GLC	1

Literature references: 15

1 - 5 of 15 literature references

Reference #1816

Feizi T; Solomon JC; Yuen CT; Jeng KCG; Frigeri LG; Hsu DK; Liu FT

The adhesive specificity of the soluble human lectin, IgE-binding protein, toward lipid-linked oligosaccharides. Presence of the blood group A, B, B-like, and H monosaccharides confers a binding activity to tetrasaccharide (lacto-N-tetraose and lacto-N-n

Published 1994 in Biochemistry, 33: 6342-6349

Reference contains 1 structure

Reference #8409

Caron M; Bladier D; Joubert R

Soluble galactoside-binding vertebrate lectins: A protein family with common properties

Published 1990 in Int J Biochem, 22: 1379-1385

Reference contains 6 structures

Reference #1685

Hansson GC; Li YT; Karlsson H

Characterization of glycosphingolipid mixtures with up to ten sugars by gas chromatography and gas chromatography-mass spectrometry as permethylated oligosaccharides and ceramides released by ceramide glycanase

Published 1989 in Biochemistry, 28: 6672-6678

Reference contains 26 structures

Reference #1345

Stoll MS; Mizuochi T; Childs RA; Feizi T

Improved procedure for the construction of neoglycolipids having antigenic and lectin-binding activities, from reducing oligosaccharides

Published 1988 in Biochem J, 256: 661-664

Reference contains 7 structures

Reference #4142

Sueyoshi S; Tsuji T; Osawa T

Carbohydrate-binding specificities of five lectins that bind to O-glycosyl-linked carbohydrate chains. Quantitative analysis by frontal-affinity chromatography

Published 1988 in Carbohydr Res, 178: 213-224

Reference contains 3 structures

NCBI Taxonomy ID	Scientific Name
9606	Homo sapiens

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